NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss1553944592           
Submitter
Handle1000GENOMES
Submitter SNP IDPHASE3_chrX_718274
RefSNP(rs#)rs60797907
Submitted Batch IDPhase3_V1
Submitted DateAug 16, 2014
Publication CitedN.D.
First entry to dbSNPAug 16 2014 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodSEQ
Ascertainment Samplesize5008
PopulationN.D.
Allele
Observed AlleleA/-
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassDIV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 5
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss1553944592|allelePos=26|len=51|taxid=9606|alleles='A/-'|mol=Genomic
 ACTCAAATAG TTAAAATCAT GAAAT
 N
 AAAAAAAAAA GGTGAGATGT GTTCA

  Submitted Frequency for ss1553944592 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
EAS1008A=0.97520000
-=0.02480000
Phase3_V1-EAS1000GENOMES
AFR1322A=0.72390002
-=0.27610001
Phase3_V1-AFR1000GENOMES
AMR694A=0.77380002
-=0.22620000
Phase3_V1-AMR1000GENOMES
SAS978A=0.91920000
-=0.08080000
Phase3_V1-SAS1000GENOMES
EUR1006A=0.79030001
-=0.20970000
Phase3_V1-EUR1000GENOMES


  dbSNP summary of Genotypes for ss1553944592 back to top
No sufficient data to compute Hardy-weinberg probability for ss1553944592.


  Submitted individual genotype for ss1553944592 back to top
There is no individual genotype data for ss1553944592.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement