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Submitted SNP(ss) Details: ss158146058           
Submitter
HandleEGP_SNPS
Submitter SNP IDFOXC1-002408
RefSNP(rs#)rs2230096
Submitted Batch IDFOXC1-EGP_AD-062609
Submitted DateJun 26, 2009
Publication CitedN.D.
First entry to dbSNPJun 26 2009 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize30
PopulationEGP_AD-PANEL
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginT:Germline C:Germline
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 3
Genotype Summarypopulation count: 3
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss158146058|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 TGCGCACGCC GAGCAGTACC CGGGCGGCAT GGCCCGCGCC TACGGGCCCT ACACGCCGCA
 GCCGCAGCCC AAGGACATGG TGAAGCCGCC CTATAGCTAC ATCGCGCTCA TCACCATGGC
 CATCCAGAAC GCCCCGGACA AGAAGATCAC CCTGAACGGC ATCTACCAGT TCATCATGGA
 CCGCTTCCCC TTCTACCGGG ACAACAAGCA GGGCTGGCAG AACAGCATCC GCCACAACCT
 CTCGCTCAAC GAGTG
 Y
 TTCGTCAAGG TGCCGCGCGA CGACAAGAAG CCGGGCAAGG GCAGCTACTG GACGCTGGAC
 CCGGACTCCT ACAACATGTT CGAGAACGGC AGCTTCCTGC GGCGGCGGCG GCGCTTCAAG
 AAGAAGGACG CGGTGAAGGA CAAGGAGGAG AAGGACAGGC TGCACCTCAA GGAGCCGCCC
 CCGCCCGGCC GCCAGCCCCC GCCCGCGCCG CCGGAGCAGG CCGACGGCAA CGCGCCCGGT
 CCGCAGCCGC CGCCC

  Submitted Frequency for ss158146058 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
EGP_CEPH-PANEL44C=1.00000000
T=0.00000000
FOXC1-EGP_CEPH-062609EGP_SNPS
EGP_ASIAN-PANEL48C=0.97916698
T=0.02083300
FOXC1-EGP_ASIAN-062609EGP_SNPS
EGP_AD-PANEL30C=0.89999998
T=0.10000000
FOXC1-EGP_AD-062609EGP_SNPS


  dbSNP summary of Genotypes for ss158146058 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
EGP_AD-PANEL3030C=0.89999998
T=0.10000000C/C=0.86666667
C/T=0.06666667
T/T=0.06666667
Pr(chiSq=5.947,df=1)
=0.020		Genotype
Freq.
EGP_ASIAN-PANEL4848C=0.97916669
T=0.02083333C/C=0.95833331
C/T=0.04166667
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss158146058 back to top
There is no individual genotype data for ss158146058.

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