Submitted SNP(ss) Details: ss217407233

Submitted SNP(ss) Details: ss217407233

Submitter
Handle	1000GENOMES
Submitter SNP ID	pilot_3_JPT_1236_chr8_19864004
RefSNP(rs#)	rs328
Submitted Batch ID	pilot_3_JPT_mar_2010
Submitted Date	Apr 09, 2010
Publication Cited	N.D.
First entry to dbSNP	Apr 9 2010 12:00:00:000AM

Resource Links
GenBank Accession	NC_000008
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	EXON_CAPTURE_SEQUENCING
Ascertainment Samplesize	210
Population	N.D.

Allele
Observed Allele	C/G
Ancestral Allele	N.D.
Allele Origin	G:Germline C:Germline
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 1
Genotype Summary	N.D.
Genotype Submission	N.D.
Haplotype	N.D.

Comment
depth.cov:5501

Fasta sequence (Legend)

 CATGATCATG TATTATTTAA ACAGTCCTGA CAGAACTGTA CCTTTGTGAA CAGTGCTTTT
 GATTGTTCTA CATGGCATAT TCACATCCAT TTTCTTCCAC AGGGTGATCT TCTGTTCTAG
 GGAGAAAGTG TCTCATTTGC AGAAAGGAAA GGCACCTGCG GTATTTGTGA AATGCCATGA
 CAAGTCTCTG AATAAGAAGT
 S
 AGGCTGGTGA GCATTCTGGG CTAAAGCTGA CTGGGCATCC TGAGCTTGCA CCCTAAGGGA
 GGCAGCTTCA TGCATTCCTC TTCACCCCAT CACCAGCAGC TTGCCCTGAC TCATGTGATC
 AAAGCATTCA ATCAGTCTTT CTTAGTCCTT CTGCATATGT ATCAAATGGG TCTGTTGCTT
 TATGCAATAC TTCCTCTTTT

Submitted Frequency for ss217407233

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
pilot_3_JPT_exon_capture_panel - EAST ASIA	208	C=0.89423102	G=0.10576900				pilot_3_JPT_mar_2010	1000GENOMES

dbSNP summary of Genotypes for ss217407233

No sufficient data to compute Hardy-weinberg probability for ss217407233.

Submitted individual genotype for ss217407233

There is no individual genotype data for ss217407233.

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