Submitted SNP(ss) Details: ss217415941

Submitted SNP(ss) Details: ss217415941

Submitter
Handle	1000GENOMES
Submitter SNP ID	pilot_3_LWK_1696_chr6_25957599
RefSNP(rs#)	rs942379
Submitted Batch ID	pilot_3_LWK_mar_2010
Submitted Date	Apr 09, 2010
Publication Cited	N.D.
First entry to dbSNP	Apr 9 2010 12:00:00:000AM

Resource Links
GenBank Accession	NC_000006
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	EXON_CAPTURE_SEQUENCING
Ascertainment Samplesize	216
Population	N.D.

Allele
Observed Allele	A/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 1
Genotype Summary	N.D.
Genotype Submission	N.D.
Haplotype	N.D.

Comment
depth.cov:2779

Fasta sequence (Legend)

 GAGAATGAAC CAGGCTTTAG GTCACCAAAG AAATGATTCT ATATTTTTCT TTAGCAGGTT
 CATCTTAATG ACAAATTACC CAAAATTTAA CTTTATTTTT CAGTCTTTGA ATACATGCTA
 TCACCTTTAT AAGTGGATTT AGCAGAGCAT CTTTGGAGTC CTTCATGACA AAAAAATTGT
 ACCTGACTAA GAAGAAATCC
 R
 CTGACAGTGG GTACAATGAC AGGTGCTATG CTCGAAAATC CTCTTGATGC TCCCATGAGA
 AAACTGGAAT ACCTGTGGGT GACAGGAATG TTCCGGTCTA GATCCAGAGA TGTTTGACAG
 TATCCTTCAG CCCTGATCCA TGTATGAATC TATAACTCAA TTATATTTCA CAATTATATA
 TAATTATAAT TAGACAATTA

Submitted Frequency for ss217415941

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
pilot_3_LWK_exon_capture_panel - WEST AFRICA	212	G=0.90094298	A=0.09905700				pilot_3_LWK_mar_2010	1000GENOMES

dbSNP summary of Genotypes for ss217415941

No sufficient data to compute Hardy-weinberg probability for ss217415941.

Submitted individual genotype for ss217415941

There is no individual genotype data for ss217415941.

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