Submitted SNP(ss) Details: ss219966142

Submitted SNP(ss) Details: ss219966142

Submitter
Handle	1000GENOMES
Submitter SNP ID	pilot_1_YRI_1775825_chr3_7881591
RefSNP(rs#)	rs226
Submitted Batch ID	phase_1_vqsr_v2b_sites_june_2011
Submitted Date	Jul 20, 2011
Publication Cited	N.D.
First entry to dbSNP	Apr 22 2010 12:00:00:000AM

Resource Links
GenBank Accession	NC_000003
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	LOW_COVERAGE
Ascertainment Samplesize	118
Population	N.D.

Allele
Observed Allele	T/C
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status	Not Validated
HWE Goodness of Fit	not applicable
Homozygote Detected
PCR Confirmed
In Expressed Sequence

Variation
Frequency Submission	population count: 1
Genotype Summary	N.D.
Genotype Submission	N.D.
Haplotype	N.D.

Comment
depth.cov:210

Fasta sequence (Legend)

 TTCAAGTCTT AAATGAGGTA AAGAATGTGA TGTACCTAGT GCCAGGTTAG AAGAGTAGTA
 GACAATCAAC AAATAGCTGT TATCAGCATG ATTGTGGCTG TTGGACACAA AGTCAATTTG
 TACTTTTGCT GCTTGTCCTT TTCTCTTTAC CTGATCCACT ATCTTCTCTC AAGATCAAGT
 TCAAATTTGG CTTCCTTTGT
 Y
 AAATTATACC CAAGCGGGAT TGTGATGGAT CTGTTTATTT TCCTGTGTCT TGGAACAGCA
 GAGTCGTCTC TGAGAGTTTG GTTTCAGGAT TTGTCTCTGT TTCCCCAGCC CACTTGCACT
 TAGCAAGTGT TTAATAAACT ATTTAGTGAA AGCCCATATG TGGGTCATGG GTAAATTCCT
 AGGACAGAAT CTAGGAATGG

Submitted Frequency for ss219966142

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
pilot_1_YRI_low_coverage_panel - WEST AFRICA	118	T=0.96610200	C=0.03389800				pilot_1_YRI_mar_2010	1000GENOMES

dbSNP summary of Genotypes for ss219966142

No sufficient data to compute Hardy-weinberg probability for ss219966142.

Submitted individual genotype for ss219966142

There is no individual genotype data for ss219966142.

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