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Submitted SNP(ss) Details: ss232145135           
Submitter
Handle1000GENOMES
Submitter SNP IDpilot_1_CEU_1749764_chr3_173641618
RefSNP(rs#)rs1916345
Submitted Batch IDphase_1_vqsr_v2b_sites_june_2011
Submitted DateJul 20, 2011
Publication CitedN.D.
First entry to dbSNPMay 1 2010 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodLOW_COVERAGE
Ascertainment Samplesize120
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote Detected
PCR Confirmed
In Expressed Sequence
Variation
Frequency Submissionpopulation count: 1
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:304

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss232145135|allelePos=201|len=401|taxid=9606|alleles='A/G'|mol=Genomic
 GTTCAAGCGA TTCTCCTGCC TCAGCCTCCT GAGTAGCTGG GATTAAAGCC ACCCGCCACC
 ATGCCCGGCT AATTTTTGTA TTTTTTAGTA GAGACAAGTG TTTTCTAGTA TACTAAACCT
 ATAGTGGTAA AAGTGAAAAA GATAAATGTT TTTGTTGTTT GAGCAGAGAA ATGTTTTGGA
 CTTAAGATGT TAAACACACA
 R
 AAAATCTTTC AAACCATTCT TCTTCAAAGC TTTCTCTGTG GCTGGGGGCG AGAGGAATTC
 TGGAAAGAAT AGTCGTACCC ATTTTGGTGG AACTTCCTGA ACGTTTACAC GAGGCATGAT
 TTTTGAGAGA TTTATTGGCT TGCCAGCTTT GAGTGTAGTT GCTAGTTCCT TGAGCAAATG
 TATATCCTGT GTCATAGCAT

  Submitted Frequency for ss232145135 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
pilot_1_CEU_low_coverage_panel
NORTH AMERICA
120G=0.85833299
A=0.14166699
pilot_1_CEU_mar_20101000GENOMES


  dbSNP summary of Genotypes for ss232145135 back to top
No sufficient data to compute Hardy-weinberg probability for ss232145135.


  Submitted individual genotype for ss232145135 back to top
There is no individual genotype data for ss232145135.

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