Submitted SNP(ss) Details: ss239573542

Submitted SNP(ss) Details: ss239573542

Submitter
Handle	1000GENOMES
Submitter SNP ID	pilot_1_CHB+JPT_1458619_chr4_7990815
RefSNP(rs#)	rs4696688
Submitted Batch ID	phase_1_vqsr_v2b_sites_june_2011
Submitted Date	Jul 20, 2011
Publication Cited	N.D.
First entry to dbSNP	May 1 2010 12:00:00:000AM

Resource Links
GenBank Accession	NC_000004
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	LOW_COVERAGE
Ascertainment Samplesize	120
Population	N.D.

Allele
Observed Allele	G/C
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status	Not Validated
HWE Goodness of Fit	not applicable
Homozygote Detected
PCR Confirmed
In Expressed Sequence

Variation
Frequency Submission	population count: 1
Genotype Summary	N.D.
Genotype Submission	N.D.
Haplotype	N.D.

Comment
depth.cov:142

Fasta sequence (Legend)

 TTTTTCAAGC TGTGCTACAG TTAACCATGT ATTACCCAAA GCCAATCTGT CCTGGCAGAT
 CATAAGCTCT TAAAGACCAG GACTTCAGGA GAACAAGCAA AGCTTCAGAG AGAAGGGAGC
 CACCTCAACA GAGTCCATAG CAATGGGTCG GCATGAGCTG ATGACTGGAG GTGCGGCGTA
 GAGTGGGGGT CTGGGGCAGC
 S
 GAGGGCAGAG AAAGCAAAAG GGCCCGCATG ACACGCTAGA GGGCTAGGAG CCACAGCTGC
 GGTAATTAGC TCAGTTTTGT CTTGTATGCC TGTTACTTAA ACACCATCTC TTGTTCAGAA
 AGAACTTCAG GTTGGGTATT TGGACTCCTT GAGCCTTCTG CTGTTTGTCT CCGGGATCTT
 TAACTCTCCT AAAAGGGGAA

Submitted Frequency for ss239573542

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
pilot_1_CHB+JPT_low_coverage_panel - EAST ASIA	120	C=0.60000002	G=0.40000001				pilot_1_CHB+JPT_mar_2010	1000GENOMES

dbSNP summary of Genotypes for ss239573542

No sufficient data to compute Hardy-weinberg probability for ss239573542.

Submitted individual genotype for ss239573542

There is no individual genotype data for ss239573542.

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