Submitted SNP(ss) Details: ss242495560

Submitted SNP(ss) Details: ss242495560

Submitter
Handle	1000GENOMES
Submitter SNP ID	pilot_1_CHB+JPT_4380637_chr12_51018556
RefSNP(rs#)	rs4761865
Submitted Batch ID	phase_1_vqsr_v2b_sites_june_2011
Submitted Date	Jul 20, 2011
Publication Cited	N.D.
First entry to dbSNP	May 1 2010 12:00:00:000AM

Resource Links
GenBank Accession	NC_000012
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	LOW_COVERAGE
Ascertainment Samplesize	120
Population	N.D.

Allele
Observed Allele	C/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status	Not Validated
HWE Goodness of Fit	not applicable
Homozygote Detected
PCR Confirmed
In Expressed Sequence

Variation
Frequency Submission	population count: 1
Genotype Summary	N.D.
Genotype Submission	N.D.
Haplotype	N.D.

Comment
depth.cov:205

Fasta sequence (Legend)

 AAAGGAGACT GCATGGCTTC CTTAGGAAAT GTTGAAGTCA GCCGGTCCAA CTCTTGCTTG
 TACAGTTGAG AACACTGGGG ACCAGAGAGG GTAGGTGACT TGTGCCAGGC TGCACGAGTC
 AGCAAAGCCA CGATGAGCAT TGAGCATTTG GGGCACTCGC CTTGGCATTT GTCTCAGTGT
 GCTACTGCTT ATCTTTGTTG
 S
 AGAGACAAGT TTAACCTACC AGAAAGTGTG GAGGCGTTCT TGACTCTTCC CCCTGGCTCA
 CATCTCAAAT CCAGTGAGTC AAGAAATCTA GTTGGCTCTT TCCTCAAATT CTATCCATAG
 CTGGCCACCT CTCACGCCCT CCAGGGATTC TCATACCCTT CTCCCTGGCA GGAGCCTCTG
 CCATCTCCTA GGATTGACCC

Submitted Frequency for ss242495560

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
pilot_1_CHB+JPT_low_coverage_panel - EAST ASIA	120	C=0.89166701	G=0.10833300				pilot_1_CHB+JPT_mar_2010	1000GENOMES

dbSNP summary of Genotypes for ss242495560

No sufficient data to compute Hardy-weinberg probability for ss242495560.

Submitted individual genotype for ss242495560

There is no individual genotype data for ss242495560.

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