Submitted SNP(ss) Details: ss24395640

Submitted SNP(ss) Details: ss24395640

Submitter
Handle	PERLEGEN
Submitter SNP ID	afd3007596
RefSNP(rs#)	rs1801260
Submitted Batch ID	AFD_EUR_18-MAY-2004
Submitted Date	Aug 21, 2004
Publication Cited	N.D.
First entry to dbSNP	Aug 10 2004 12:00:00:000AM

Resource Links
GenBank Accession	NC_000004.6
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	AFD_CHIP_HYB
Ascertainment Samplesize	48
Population	AFD_EUR_PANEL

Allele
Observed Allele	A/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	Unknown

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 3
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 CCCTGGAGGT CATTTCATAG CTGAGCTTCT TAATATTTGG CAATATATTC TTTTTCCATC
 AAAAAATATC CAGGCACCTA AAACACTG
 TCAGAACTGG CT
 R
 TGCCCCTATG AT
 CACCTCCTGC TGGCTGGTAT TTAATGTACA TCTGTAGCAC TAGGCAGCAT TTTCTCTGCC
 AACTAATTCC AGGAACTAGA ACACTCAA

Submitted Frequency for ss24395640

There is no frequency submission for ss24395640.

dbSNP summary of Genotypes for ss24395640

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
AFD_EUR_PANEL - NORTH AMERICA	48	48	A=0.64583331	G=0.35416666	A/G=0.54166669 A/A=0.37500000 G/G=0.08333334	Pr(chiSq=0.813,df=1) =0.371	Genotype Freq.
AFD_AFR_PANEL - NORTH AMERICA	46	46	A=0.91304350	G=0.08695652	A/A=0.82608694 A/G=0.17391305	Pr(chiSq=0.035,df=1) =1.000	Genotype Freq.
AFD_CHN_PANEL - NORTH AMERICA	48	48	A=0.89583331	G=0.10416666	A/A=0.79166669 A/G=0.20833333	Pr(chiSq=0.064,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss24395640

There is no individual genotype data for ss24395640.

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