Submitted SNP(ss) Details: ss24648907

Submitted SNP(ss) Details: ss24648907

Submitter
Handle	PERLEGEN
Submitter SNP ID	afd1879961
RefSNP(rs#)	rs328
Submitted Batch ID	AFD_EUR_18-MAY-2004
Submitted Date	Aug 21, 2004
Publication Cited	N.D.
First entry to dbSNP	Aug 10 2004 12:00:00:000AM

Resource Links
GenBank Accession	NC_000008.6
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	AFD_CHIP_HYB
Ascertainment Samplesize	48
Population	AFD_EUR_PANEL

Allele
Observed Allele	C/G
Ancestral Allele	N.D.
Allele Origin	G:Germline C:Germline
SNP Class	SNV
CpG Code	Unknown

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 3
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 AGGGTGATCT TCTGTTCTAG GGAGAAAGTG TCTCATTTGC AGAAAGGAAA GGCACCTGCG
 GTATTTGTGA AATGCCATGA CAAGTCTC
 TGAATAAGAA GT
 S
 AGGCTGGTGA GC
 ATTCTGGGCT AAAGCTGACT GGGCATCCTG AGCTTGCACC CTAAGGGAGG CAGCTTCATG
 CATTCCTCTT CACCCCATCA CCAGCAGC

Submitted Frequency for ss24648907

There is no frequency submission for ss24648907.

dbSNP summary of Genotypes for ss24648907

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
AFD_EUR_PANEL - NORTH AMERICA	44	44	C=0.72727275	G=0.27272728	C/C=0.54545456 C/G=0.36363637 G/G=0.09090909	Pr(chiSq=0.153,df=1) =0.752	Genotype Freq.
AFD_AFR_PANEL - NORTH AMERICA	42	42	C=0.95238096	G=0.04761905	C/C=0.90476191 C/G=0.09523810	Pr(chiSq=0.005,df=1) =1.000	Genotype Freq.
AFD_CHN_PANEL - NORTH AMERICA	46	46	C=0.93478262	G=0.06521739	C/C=0.86956519 C/G=0.13043478	Pr(chiSq=0.014,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss24648907

There is no individual genotype data for ss24648907.

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