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Submitted SNP(ss) Details: ss2820953179           
Submitter
HandleGNOMAD
Submitter SNP IDrs769552098
RefSNP(rs#)rs200025260
Submitted Batch IDgenome_batch_chr5
Submitted DateMay 18, 2017
Publication CitedN.D.
First entry to dbSNPMay 18 2017 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodGNOMAD
Ascertainment Samplesize30992
PopulationN.D.
Allele
Observed AlleleGG/-
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassDIV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote Detected
PCR Confirmed
In Expressed Sequence
Variation
Frequency Submissionpopulation count: 9
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss2820953179|allelePos=26|len=51|taxid=9606|alleles='GG/-'|mol=Genomic
 ATCAATGAGT GGATAAAGAA ACTGT
 N
 GGGGTGTGTG TGTGTGTGTG TGTGT

  Submitted Frequency for ss2820953179 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
FIN3092-=0.89424318
GG=0.10575679
gnomad-FINGNOMAD
NFE13010-=0.84104532
GG=0.15895465
gnomad-NFEGNOMAD
AMR742-=0.76684636
GG=0.23315364
gnomad-AMRGNOMAD
EAS1554-=0.90411842
GG=0.09588160
gnomad-EASGNOMAD
OTH846-=0.83096927
GG=0.16903073
gnomad-OTHGNOMAD
AFR7612GG=0.55281132
-=0.44718865
gnomad-AFRGNOMAD
FEMALE12134-=0.74295366
GG=0.25704631
gnomad-FEMALEGNOMAD
ASJ246-=0.81300813
GG=0.18699187
gnomad-ASJGNOMAD
MALE14968-=0.73309726
GG=0.26690271
gnomad-MALEGNOMAD


  dbSNP summary of Genotypes for ss2820953179 back to top
No sufficient data to compute Hardy-weinberg probability for ss2820953179.


  Submitted individual genotype for ss2820953179 back to top
There is no individual genotype data for ss2820953179.

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