Submitted SNP(ss) Details: ss3177195

Submitted SNP(ss) Details: ss3177195

Submitter
Handle	WICVAR
Submitter SNP ID	WI-17333
RefSNP(rs#)	rs2230096
Submitted Batch ID	06.26.01-n
Submitted Date	Jun 28, 2001
Publication Cited	N.D.
First entry to dbSNP	Jun 28 2001 12:00:00:000AM

Resource Links
GenBank Accession	NM_001453
Submitted Gene Name	FOXC1
Submitted Gene ID	2296
Submitted SNP Synonyms	G3231a3
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	cDNA
Method	MITOG-RT-SEQ
Ascertainment Samplesize	64
Population	MITOGPOP6

Allele
Observed Allele	C/T
Ancestral Allele
Allele Origin	T:Germline C:Germline
SNP Class	SNV
CpG Code	nonCpG

Validation
Validation Status	Not Validated
HWE Goodness of Fit	not applicable
Homozygote Detected	Y
PCR Confirmed	Y
In Expressed Sequence	Y

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 1
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 GCTCATCACC ATGGCCATCC AGAACGCCCC GGACAAGAAG ATCACCCTGA ACGGCATCTA
 CCAGTTCATC ATGGACCGCT TCCCCTTCTA CCGGGACAAC AAGCAGGGCT GGCAGAACAG
 CATCCGCCAC AACCTCTCGC TCAACGAGTG
 Y
 TTCGTCAAGG TGCCGCGCGA CGACAAGAAG CCGGGCAAGG GCAGCTACTG GACGCTGGAC
 CCGGACTCCT ACAACATGTT CGAGAACGGC AGCTTCCTGC GGCGGCGGCG GCGCTTCAAG
 AAGAAGGA

Submitted Frequency for ss3177195

There is no frequency submission for ss3177195.

dbSNP summary of Genotypes for ss3177195

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
MITOGPOP6 - MULTI-NATIONAL	64	64	C=0.98437500	T=0.01562500	C/C=0.96875000 C/T=0.03125000	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss3177195

There is no individual genotype data for ss3177195.

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