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Submitted SNP(ss) Details: ss342253806           
Submitter
HandleNHLBI-ESP
Submitter SNP IDESP2500-chr8-19819724
RefSNP(rs#)rs328
Submitted Batch IDESP2500
Submitted DateMar 25, 2011
Publication CitedN.D.
First entry to dbSNPMar 25 2011 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		genomic
MethodEXOME CAPTURE AND SEQUENCING
Ascertainment Samplesize4550
PopulationN.D.
Allele
Observed AlleleC/G
Ancestral AlleleN.D.
Allele OriginG:Germline C:Germline
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss342253806|allelePos=251|len=501|taxid=9606|alleles='C/G'|mol=Genomic
 TGGCCTGAGT GTGACAGTTA ATTATTGGGA ATATCAAAAC AATTACCCAG CATGATCATG
 TATTATTTAA ACAGTCCTGA CAGAACTGTA CCTTTGTGAA CAGTGCTTTT GATTGTTCTA
 CATGGCATAT TCACATCCAT TTTCTTCCAC AGGGTGATCT TCTGTTCTAG GGAGAAAGTG
 TCTCATTTGC AGAAAGGAAA GGCACCTGCG GTATTTGTGA AATGCCATGA CAAGTCTCTG
 AATAAGAAGT
 S
 AGGCTGGTGA GCATTCTGGG CTAAAGCTGA CTGGGCATCC TGAGCTTGCA CCCTAAGGGA
 GGCAGCTTCA TGCATTCCTC TTCACCCCAT CACCAGCAGC TTGCCCTGAC TCATGTGATC
 AAAGCATTCA ATCAGTCTTT CTTAGTCCTT CTGCATATGT ATCAAATGGG TCTGTTGCTT
 TATGCAATAC TTCCTCTTTT TTTCTTTCTC CTCTTGTTTC TCCCAGCCCG GACCTTCAAC
 CCAGGCACAC

  Submitted Frequency for ss342253806 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
ESP_Cohort_Populations
- NORTH AMERICA 		13006C/C=0.83530700
C/G=0.15669701
G/G=0.00799600
ESP6500SINHLBI-ESP


  dbSNP summary of Genotypes for ss342253806 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
ESP_Cohort_Populations
- NORTH AMERICA 		45504550C=0.92153847
G=0.07846154C/C=0.84791207
C/G=0.14725275
G/G=0.00483516
Pr(chiSq=0.759,df=1)
=0.403		Genotype
Freq.

  Submitted individual genotype for ss342253806 back to top
There is no individual genotype data for ss342253806.

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