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Submitted SNP(ss) Details: ss342265955           
Submitter
HandleNHLBI-ESP
Submitter SNP IDESP2500-chr8-143957786
RefSNP(rs#)rs5290
Submitted Batch IDESP2500
Submitted DateMar 25, 2011
Publication CitedN.D.
First entry to dbSNPMar 25 2011 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		genomic
MethodEXOME CAPTURE AND SEQUENCING
Ascertainment Samplesize4540
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss342265955|allelePos=251|len=501|taxid=9606|alleles='A/G'|mol=Genomic
 AGAAATGTGG GGCCCATAGC CTGGGGATGG GACACGTGGG CGCCGTGTGA CATTGGCAGG
 CAGTGCCTGG GAGGCAGGCT TGGCATCACC CTCTCTGGGT GGGGCTGGTT GCCGGCCTGA
 CCGTGTCCAC GCTCCCTGCA GTGAGTTCCA TAGAGTTGGC CTTGATGGCA TCTGGCGACA
 GTTCCGCATT CAACAGGAGC TCCGCCACGA TGCTGGTGTA CTGTTGAGGG CGGCTGAAGG
 CCAGTTCCTG
 R
 TAGATTTTCT GGATACAGTT GTCGCCTATC CGGGGAGCGG GAGGCAGCCC TCAGACTTTG
 GTGCTGGGAG ACATCCTTCA GTGTCCTCCT CCTGCCCAGA CTGCCCCGAC ACCCAAGTCT
 CCCTGCTCTC ATCCCAAATT CTCCGGATCA GCCCAGCCCA GCCCCAGCCT CGCACCAATC
 TCCCTGGCAG GAAGGTGAGG AATCCCCGAC CCCTCCCTGT GGCCTCCATT CCCCACTGGG
 TGGTGGAGAG

  Submitted Frequency for ss342265955 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
ESP_Cohort_Populations
- NORTH AMERICA 		13006A/A=0.99292600
A/G=0.00707400
G/G=0.00000000
ESP6500SINHLBI-ESP


  dbSNP summary of Genotypes for ss342265955 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
ESP_Cohort_Populations
- NORTH AMERICA 		45404540A=0.99581498
G=0.00418502A/A=0.99162996
A/G=0.00837004
G/G=0.00000000
Pr(chiSq=0.040,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss342265955 back to top
There is no individual genotype data for ss342265955.

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