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Submitted SNP(ss) Details: ss44765792           
Submitter
HandleABI
Submitter SNP IDhCV8907080
RefSNP(rs#)rs385955
Submitted Batch IDxplore_hum_chr6_1
Submitted DateJul 19, 2005
Publication CitedN.D.
First entry to dbSNPJul 19 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodXPLORE
Ascertainment Samplesize10
PopulationCelera_Donors
Allele
Observed AlleleA/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss44765792|allelePos=301|len=601|taxid=9606|alleles='A/T'|mol=Genomic
 CATTTACAAA GGAATGACAA ACTACTGGAA AATGCACCAT CAGTGAACAC TTAACAAGCA
 CCTACCTACC ATGCGACACA CACATGCAAG AGGAACCACA AAGCATGAAG CCCAGGAGCC
 ATACCTTCTT CAGGCCCGTG GACTCGTCCT CAATGTCATC CGGCAGCAGG ATGACCATGC
 TGAGCTCCTC GCCTTGGTAA GGCAGTTCCA GCACACGGCA CTTAAGGTCC TCGATGTAGC
 CATATGCAAA TTTTTTCTTC TGATACATCA TTTTCACAGT TTTTCTGTCT TTCTGAACAG
 W
 TTTAAAAAAT CACTGAAATT ATTCTCTGCA TTCTTTTAGA GCAATGCATG ACTCTGTACA
 GTTACCTCAC CTCACCTTAT TCAATCTGAA TGGTGCATTC GTCGTGGCTT CTTTCATGAA
 TTTATCCTTC CAGTTTCCCT TGAAATAGAT GGCATTTACT AGCACAAGTT TGGTCATGTT
 ATCAACCATG CCCGAAGCCA ACAGTTCCGG AATTTTTCCT AAAAAAAAAT CAAGTTAGCG
 TAAAAAAAAT CCAAATCGGA ATTCCAAATT TGAACTGACA ATATATTAGC ACGGAAATGC

  Submitted Frequency for ss44765792 back to top
There is no frequency submission for ss44765792.


  dbSNP summary of Genotypes for ss44765792 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU116116A=0.63793105
T=0.36206895A/T=0.55172414
A/A=0.36206895
T/T=0.08620690
Pr(chiSq=2.190,df=1)
=0.150
Genotype
Freq.
HapMap-HCB
EAST ASIA
8888A=0.59090906
T=0.40909091A/T=0.45454547
A/A=0.36363637
T/T=0.18181819
Pr(chiSq=0.157,df=1)
=0.752
Genotype
Freq.
HapMap-JPT8686A=0.65116280
T=0.34883720A/T=0.46511629
A/A=0.41860464
T/T=0.11627907
Pr(chiSq=0.024,df=1)
=1.000
Genotype
Freq.
HapMap-YRI106106T=0.65094340
A=0.34905660T/T=0.47169811
A/T=0.35849056
A/A=0.16981132
Pr(chiSq=2.362,df=1)
=0.150
Genotype
Freq.

  Submitted individual genotype for ss44765792 back to top
There is no individual genotype data for ss44765792.

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