Submitted SNP(ss) Details: ss5779715

Submitted SNP(ss) Details: ss5779715

Submitter
Handle	SC_JCM
Submitter SNP ID	NT_022853.11_3623903
RefSNP(rs#)	rs1801260
Submitted Batch ID	02-JAN-2003
Submitted Date	Jan 10, 2003
Publication Cited	[1] SNPs detected by comparing TSC reads to NCBI build 30 Genomic Reference Sequence using SsahaSNP [2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNP	Jan 10 2003 12:00:00:000AM

Resource Links
GenBank Accession	NT_022853.11
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	SNPS_DETECTED_BY_GENOMIC_ALIGNMENT_OF_TSC_READS
Ascertainment Samplesize	2
Population	N.D.

Allele
Observed Allele	G/A
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	nonCpG

Validation
Validation Status	Not Validated
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	N.D.
Genotype Submission	N.D.
Haplotype	N.D.

Comment
SEQUENCE:S152P662462FG9.T0.SCFPOSITION:89QUALITY:40

Fasta sequence (Legend)

 TAAGCAAACC CCTGACATGG CAGTGGTATG TCCTCTGTAA CACTTGATAA GAGGCACAGA
 ACCACTAAAA GTTACTAACA TCATTAGTGC CTTTCTGATT CCCTGGAGGT CATTTCATAG
 CTGAGCTTCT TAATATTTGG CAATATATTC TTTTTCCATC AAAAAATATC CAGGCACCTA
 AAACACTGTC AGAACTGGCT
 R
 TGCCCCTATG ATCACCTCCT GCTGGCTGGT ATTTAATGTA CATCTGTAGC ACTAGGCAGC
 ATTTTCTCTG CCAACTAATT CCAGGAACTA GAACACTCAA TACTGCATCT CATGAAACTG
 CTGGAACTTT CCCTCCTTTC CTCAGGTCAT CTGAGTAACT CTTAATGGGC CATCCCCTTC
 CTCCCTTGAT GTCAAGAGAG

Submitted Frequency for ss5779715

There is no frequency submission for ss5779715.

dbSNP summary of Genotypes for ss5779715

No sufficient data to compute Hardy-weinberg probability for ss5779715.

Submitted individual genotype for ss5779715

There is no individual genotype data for ss5779715.

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