Submitted SNP(ss) Details: ss6092318

Submitted SNP(ss) Details: ss6092318

Submitter
Handle	SC_JCM
Submitter SNP ID	NT_009743.12_317946
RefSNP(rs#)	rs1849710
Submitted Batch ID	02-JAN-2003
Submitted Date	Jan 10, 2003
Publication Cited	[1] SNPs detected by comparing TSC reads to NCBI build 30 Genomic Reference Sequence using SsahaSNP [2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNP	Jan 10 2003 12:00:00:000AM

Resource Links
GenBank Accession	NT_009743.12
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	SNPS_DETECTED_BY_GENOMIC_ALIGNMENT_OF_TSC_READS
Ascertainment Samplesize	2
Population	N.D.

Allele
Observed Allele	G/C
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	nonCpG

Validation
Validation Status	Not Validated
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	N.D.
Genotype Submission	N.D.
Haplotype	N.D.

Comment
SEQUENCE:S147P6188762FA10.T0.SCFPOSITION:515QUALITY:48

Fasta sequence (Legend)

 GCACATTATG GGCAGTTACA TTCTCAAGTT TTTAAAATCA AGGGGAACTT GTATACTGGG
 CCTGTTTTTC AGCCTGTTTG CTACCTTTTT TGCATTCTAT CCCATGTGAA TTTTACAGAC
 ACTGGGCTAA AAAGGGTATT CAGACACATG GACACACATT CCTAGAATGT CATCATATGG
 TCCTAATTCC ATGTCACCAA
 S
 AACACAGACA AGACCCTGTT TACAACTTTT TCTTTCCTTT TTTTTAATTT TAGACCTTTC
 TGAGAAGATT ATTATATATG ACATATCTAT AGCTATGTGT ATGGCCATAG ATGTATTTCT
 GTGTGTACAT ATGTATAGTC ATGTATTCCT GCATATGTAC ATACAAATAC AGAGATATAT
 AAAGTACATA GAAATTCCTT

Submitted Frequency for ss6092318

There is no frequency submission for ss6092318.

dbSNP summary of Genotypes for ss6092318

No sufficient data to compute Hardy-weinberg probability for ss6092318.

Submitted individual genotype for ss6092318

There is no individual genotype data for ss6092318.

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