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Submitted SNP(ss) Details: ss71648660           
Submitter
HandleSI_EXO
Submitter SNP IDNT_030737.9_7664652
RefSNP(rs#)rs328
Submitted Batch IDSI_EXO_20070501
Submitted DateMay 07, 2007
Publication CitedN.D.
First entry to dbSNPMay 7 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodSI_EXOSEQ_1
Ascertainment Samplesize46
PopulationN.D.
Allele
Observed AlleleC/G
Ancestral AlleleN.D.
Allele OriginG:Germline C:Germline
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 6
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
Warning: Incomplete sequence coverage - frequency may be inaccurate.ExoSeq_class:MHe2Estimated_frequency:.1Minor_allele:G

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss71648660|allelePos=401|len=801|taxid=9606|alleles='C/G'|mol=Genomic
 GAGATGGCAG AGTTGATCTT TTATCATCTC TTGGTGAAAG CCCAGTAACA TAAGACTGCT
 CTAGGCTGTC TGCATGCCTG TCTATCTAAA TTAACTAGCT TGGTTGCTGA ACACCAGGTT
 AGGCTCTCAA ATTACCCTCT GATTCTGATG TGGCCTGAGT GTGACAGTTA ATTATTGGGA
 ATATCAAAAC AATTACCCAG CATGATCATG TATTATTTAA ACAGTCCTGA CAGAACTGTA
 CCTTTGTGAA CAGTGCTTTT GATTGTTCTA CATGGCATAT TCACATCCAT TTTCTTCCAC
 AGGGTGATCT TCTGTTCTAG GGAGAAAGTG TCTCATTTGC AGAAAGGAAA GGCACCTGCG
 GTATTTGTGA AATGCCATGA CAAGTCTCTG AATAAGAAGT
 S
 AGGCTGGTGA GCATTCTGGG CTAAAGCTGA CTGGGCATCC TGAGCTTGCA CCCTAAGGGA
 GGCAGCTTCA TGCATTCCTC TTCACCCCAT CACCAGCAGC TTGCCCTGAC TCATGTGATC
 AAAGCATTCA ATCAGTCTTT CTTAGTCCTT CTGCATATGT ATCAAATGGG TCTGTTGCTT
 TATGCAATAC TTCCTCTTTT TTTCTTTCTC CTCTTGTTTC TCCCAGCCCG GACCTTCAAC
 CCAGGCACAC ATTTTAGGTT TTATTTTACT CCTTGAACTA CCCCTGAATC TTCACTTCTC
 CTTTTTTCTC TACTGCGTCT CTGCTGACTT TGCAGATGCC ATCTGCAGAG CATGTAACAC
 AAGTTTAGTA GTTGCCGTTC TGGCTGTGGG TGCAGCTCTT

  Submitted Frequency for ss71648660 back to top
There is no frequency submission for ss71648660.


  dbSNP summary of Genotypes for ss71648660 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU120120C=0.87500000
G=0.12500000C/C=0.76666665
C/G=0.21666667
G/G=0.01666667
Pr(chiSq=0.005,df=1)
=1.000
Genotype
Freq.
HapMap-HCB
EAST ASIA
9090C=0.91111112
G=0.08888889C/C=0.82222223
C/G=0.17777778
Pr(chiSq=0.073,df=1)
=1.000
Genotype
Freq.
HapMap-JPT8888C=0.85227275
G=0.14772727C/C=0.72727275
C/G=0.25000000
G/G=0.02272727
Pr(chiSq=0.002,df=1)
=1.000
Genotype
Freq.
HapMap-YRI120120C=0.96666664
G=0.03333334C/C=0.93333334
C/G=0.06666667
Pr(chiSq=0.005,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss71648660 back to top
There is no individual genotype data for ss71648660.

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