NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss77947927           
Submitter
HandleHGSV
Submitter SNP IDCor12156_DIV_20070510.chr17_5131641-5131643_1
RefSNP(rs#)rs55858409
Submitted Batch IDNA12156-Fosmids-20070510-DIPs
Submitted DateOct 15, 2007
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 15 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodNA12156-FOSMIDS-DIPS
Ascertainment Samplesize3
PopulationN.D.
Allele
Observed Allele-/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassDIV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position quality orientation DIPsize105509613 545-546 59 reverse -1

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss77947927|allelePos=501|len=1001|taxid=9606|alleles='-/A'|mol=Genomic
 CAGAGAGGTA ACGAGGTGGA GGCAGATCTT CTTGGGCCCT AGAAGTATTG CAAAGATTGG
 TTTTCACTAT GGGGAACCAT TGAAAAGCTT TGAACAGAGG AATGATGTGA TCTCACTTAT
 GTTTTAAAAA AATCACTCTG GGCCAAAGTG CTGGGATTAC AGGCGAGGTG GCTCATGCCT
 AGAATTGTGC CTGACAAACA GTATACAGGC TCACGCCTGT AATCCCAGCA CTTTGGGAGT
 CTGAGGCAGG TGGATCACCT GAGGTCAGGA GTTCCAGACC AGCCTGGCCA ACATGGTGAA
 ACCCAATCTC TACTAAAAAT ACAAAAATTA GTCAGACATG GTGGCACGCG CCTGTAATCC
 CAGCTACTTG GGAGGCTGAG GCAGGAGAAT TGCTTGAACC TGGGAGGTGG AGGTTGCAGT
 GGGCGAAGAT CATGCCACCG TGCTCCAGCC TGGGCAACAG AGTGAGACTC TGTCGCAAAA
 AAAAAAAAAA AAAAAAAAAA
 N
 CCCAAAACAC TGAGCGGGCG TGGTGTTGTC TCATACCTGT AATCTCAACA CTTTGGGAGG
 CCTAGGTGGG TGGATTGCTT GAGCCCAGGA GTTTGAGACC AGCCTGGGCA ATATGGCAAA
 ACCGCATCTC TACAAAAAAT TAGCCGGGTG TGATGGCCTG TGCCTCTAGT CCCAGCTACT
 CAGGAGGCTG AGGTGGGAGG ATCACCTAAG CCTGGGAGGT CGAGGCTGCA GTGAGCTGTG
 ATCTTGCTAC TTCACTCCCA CCTAGGTGAC AGAGTAAGAC CCTGTCTCAA AAAAAAAATC
 ACTCTGACTG CTGGATTGGC AGTGGAGTAA TAGGGAGGTA TGAATCCAGA AAAAAGATGT
 TGAAGCTTGG ACCAGGATGG AGGTTATATT TTGAAAGTAT GGCCAACAGG ATTTGCTGAC
 GGATTGAATA TGGGATGCAA AAGAAACTGA GTAGTCAAGG ATTACTCAAA GGTGTTTGGC
 CTGAGCAACT AGATGAACAC

  Submitted Frequency for ss77947927 back to top
There is no frequency submission for ss77947927.


  dbSNP summary of Genotypes for ss77947927 back to top
No sufficient data to compute Hardy-weinberg probability for ss77947927.


  Submitted individual genotype for ss77947927 back to top
There is no individual genotype data for ss77947927.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement