NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss80335025           
Submitter
HandleHGSV
Submitter SNP IDCor18507_DIV_20070510.chr12_111992864-111992865_2
RefSNP(rs#)rs397824528
Submitted Batch IDNA18507-Fosmids-20070510-DIPs
Submitted DateNov 23, 2007
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPNov 23 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodNA18507-FOSMIDS-DIPS
Ascertainment Samplesize3
PopulationN.D.
Allele
Observed AlleleA/-
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassDIV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position quality orientation DIPsize66777657 364-366 62 forward 1

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss80335025|allelePos=397|len=875|taxid=9606|alleles='A/-'|mol=Genomic
 GTTCCCCTGC ATAAACAGGT GCTGAAGTCA GGAGGACTCA GGCAGACACA CTGTACACAT
 CACCGCAAGC TCTCCTTCAG TCCTCCCAAC GACTATAAGT GAGGTGTTAA TATGCCTGTT
 TTACAGATAA GGTAACTGAG GATCAAGAAG TTAAGTGACT TGTTCAAGGT TGTCACTGCA
 GCAGTTTTGT GGTTTCCTCT CTAAGATGGA GAGAAGTTAC ACCAGGACTT AGTGCCTGGG
 AAGCAAAGAG GTGAAATTAC TCGGCCAGGA TTGCACAGCT GACAGTGATG ATACCGATGG
 CTGTGCTTTT AGTAGCTGTT AGGTACCAGG AACTGTGCTT GGCCCTTGAC ACATATAATT
 TCACGGAATC CTCACAGCAG ATTAAAAAAA AAAAAA
 N
 GGTACCATAT TGTCCCCATT TTACAGACCA CCCCTTACAA GAGATGAGAT GATGTGCTGT
 GTGTCGCCCA GCTCATTAGT GGTTGAACTG AGATATGAAA GCAGCTCTGG CTGACTCCAA
 AAGCCAAAGC TCTTTTGAGG GCCAGAGGAA GAGGAGAGTC AGGATACCTT TTCCTAGGGG
 CTCTTCATTT GAAGAGAGGA TAGTACCTTG TCACAGAAAC TGACATCAGT AAATATTCCA
 GAAGAGAAAA AAAATTCATC ACCAAATGCT TTTGAAAACC TGGACTTATC ATTGTTAATG
 ATATGTTCTT ACGCAGGGCT TGTCAGAGCC TTTAATATGC TCAGATATGT TGTGAATTTC
 AGAGAGGGAG ACAGTGACGT GTTCCTAACT TACTTGATTC CTGAATCCTT CTTTCCTGGA
 ACGTTTTATG GAAATTAATA ATGCTACATC TAACAAGCTT TGAGAGATGT TAAAATAG

  Submitted Frequency for ss80335025 back to top
There is no frequency submission for ss80335025.


  dbSNP summary of Genotypes for ss80335025 back to top
No sufficient data to compute Hardy-weinberg probability for ss80335025.


  Submitted individual genotype for ss80335025 back to top
There is no individual genotype data for ss80335025.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement