NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss80753439           
Submitter
HandleKRIBB_YJKIM
Submitter SNP IDKHS1000065
RefSNP(rs#)rs6256
Submitted Batch IDKHB2007_2_AFFYMETRIX_MIP
Submitted DateNov 26, 2007
Publication Cited16376517
First entry to dbSNPNov 26 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodAFFYMETRIX_MIP
Ascertainment Samplesize174
PopulationKHP_Korean
Allele
Observed AlleleA/C
Ancestral AlleleN.D.
Allele OriginT:Germline C:Germline
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 2
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss80753439|allelePos=51|len=101|taxid=9606|alleles='A/C'|mol=Genomic
 TTGCCCTTGG AGCTCCTCTA GCTCCCAGAG ATGCTGGTTC CCAGAGGCCC
 M
 GAAAAAAGGA AGACAATGTC TTGGTTGAGA GCCATGAAAA AAGTCTTGGA

  Submitted Frequency for ss80753439 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
KHP1
EAST ASIA
174C=0.86781597
A=0.13218400
C/C=0.77011502
A/C=0.19540200
A/A=0.03448300
KHB2007_2_AFFYMETRIX_MIPKRIBB_YJKIM


  dbSNP summary of Genotypes for ss80753439 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
KHP_Korean
EAST ASIA
174174C=0.86781609
A=0.13218391C/C=0.77011496
A/C=0.19540229
A/A=0.03448276
Pr(chiSq=1.913,df=1)
=0.200
Genotype
Freq.

  Submitted individual genotype for ss80753439 back to top
There is no individual genotype data for ss80753439.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement