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Submitted SNP(ss) Details: ss80834121           
Submitter
HandleHGSV
Submitter SNP IDCor12878_DIV_20070510.chr3_9454234-9454235_2
RefSNP(rs#)rs61168151
Submitted Batch IDNA12878-Fosmids-20070510-DIPs
Submitted DateNov 26, 2007
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPNov 26 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodNA12878-FOSMIDS-DIPS
Ascertainment Samplesize3
PopulationN.D.
Allele
Observed AlleleGT/-
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassDIV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position quality orientation DIPsize86298366 203-206 33 reverse 2

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss80834121|allelePos=229|len=726|taxid=9606|alleles='GT/-'|mol=Genomic
 TGTTTGGTGG AAAAAACTTA GGTAATGCTA GCATGTTTCT TAAGATATCA AATAAAAGAG
 TTTATGAAGT ATGATTTTGT AAAGAACTTG GAGAATAGAG CAAGTATGTG GAATGGTTTA
 AAAGAAGTGT AAGGTGCTGG TTGATTAAAA ATAGCTTGCC AAAAGGAGAT TTGATTATGC
 TGTCTGGTAT CCTCCTTTAC GTGTGTGTGT GTGTGTGTGT GTGTGTGT
 N
 ATAAATATAT ATATATGAGG AAAACATGCC TCTCAAATTA TTACTGGGGG CTTCAAAGCA
 TTTAAATAGA ATTAAATTCA AGTTTATGAG TATTCATATT CCTAAATGAT ACAAAAGCAG
 GATCTTTCCT ATTGAGAGTT ATAGGGCATA AATATTAAAA TCTTTAGTAA GGCCAGGCGC
 AGTAGCTCAC GCCTGTAATC CTAGCACTTT GGAAGACCAA GGCAAGTGGA TCACCTGAGG
 TCAGGAATTC AAGACCAGCC TGGCCAACAT GGTGAAACCC CATCTCTACT AAAAATACCA
 AAATTAGCCA GGCGTGGTGG CAGGCACCTG TAGTCCCAGC TGCTTGGGAG GCTGAGGCAG
 GAGAATCGCT TGAACCCAGG AGGCAGTGGT TGTAGTGAGC CGAGATCACG CCACTGCACT
 CCAGCCTGGG CAACAGAGCA AGACTCCATC TCAAAAAAAA AAAAAAATTC AGTAAGGATA
 AGCTTTTTAG GATTGCT

  Submitted Frequency for ss80834121 back to top
There is no frequency submission for ss80834121.


  dbSNP summary of Genotypes for ss80834121 back to top
No sufficient data to compute Hardy-weinberg probability for ss80834121.


  Submitted individual genotype for ss80834121 back to top
There is no individual genotype data for ss80834121.

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