NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss82219838           
Submitter
HandleHGSV
Submitter SNP IDCor19129_DIV_20070510.chr20_34673323-34673333_1
RefSNP(rs#)rs60975859
Submitted Batch IDNA19129-Fosmids-20070510-DIPs
Submitted DateNov 30, 2007
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPNov 30 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodNA19129-FOSMIDS-DIPS
Ascertainment Samplesize3
PopulationN.D.
Allele
Observed Allele-/AAAAAAAAA
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassDIV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position quality orientation DIPsize99437201 352-353 54 reverse -9

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss82219838|allelePos=501|len=818|taxid=9606|alleles='-/AAAAAAAAA'|mol=Genomic
 TTTGACACAG GCTCACCATT TCACCCAGGC TGTAGTGCAG TGGCGCAGTC TTGGCTCACT
 GCAGCCTCTG CCTCCCATGC TCAAGTGATC CTCCCACCTC AGCCTCCCGA GTAGTTGGGA
 CTACAGGTGT GAGCCACCAT GCCCGGATAT TTTTTGTATT TTTAGTAGAA ATGGGGTTTC
 ATCATGTTGG CCAGGCTGGT CTTGGAACTC CTGACCTCAG GTGATCTGCC TGCTTCCGCC
 TCCCAAAGTA CTGGGATTAC AGGTGTGAGC CACTGCACCT GGCCCATTTT TTTTTAAATT
 ATACTCATGG CCTGGCATGG TGGCTCATGC CTGTAATTAT AGCACTTTAG GAGGCTGAGA
 CAGGCAGACT GCTTGAGTCC AGGAGTTCGA GACCAGCTTG GGCAATATGG TGAAACCCAT
 CTCTACAGGG GAAAAAAAAA AATAGCTAGG AGTGGTGGTG TGTACCTGTT GAGTCCCAGC
 AGGACTCAAA AAAAAAAAAA
 N
 CCACAAAACC TTATGTGTCC AGACTCTAAC CCAAACCAAT AAAATCTTTT GAGATGTAGT
 GCTGGGGCAT CTATATGTTT TTTTAAAAGA ACCAAGAGAT TACAATGGGT AGCCAAGGTT
 TGAGAATCCC TGCTTTGATA TGCAGCTGAC AAGTTATAGT ATTTTCACAT TGGTAGTCGC
 AGCACCTGCT AGCAGTGTAA TATGCTTTAC TTGAATCATT TCCACATCTG CACCTCAATT
 CCCTGGGCCT GGGGTTGCCA TTTGGTAGGG GAGGAGCTTA TCAGGAGTTC CTTTGCAAGT
 GCAGGAGGGC AGTCCTG

  Submitted Frequency for ss82219838 back to top
There is no frequency submission for ss82219838.


  dbSNP summary of Genotypes for ss82219838 back to top
No sufficient data to compute Hardy-weinberg probability for ss82219838.


  Submitted individual genotype for ss82219838 back to top
There is no individual genotype data for ss82219838.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement