NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss85871639           
Submitter
HandleHGSV
Submitter SNP IDCor18517_SNV_20070510.chr4_8057096
RefSNP(rs#)rs4696685
Submitted Batch IDNA18517-Fosmids-20070510
Submitted DateDec 06, 2007
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPDec 6 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodNA18517-FOSMIDS
Ascertainment Samplesize3
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 2
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position quality59267182 -444 4757867011 351 61

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss85871639|allelePos=201|len=701|taxid=9606|alleles='T/C'|mol=Genomic
 GGATATAGTG AAGATGTTGC ACATAAAACA ATTATGAAGA ATATGAAAGA TATTGCCAAA
 AAGTTGCTTA AGGTTTCATC ATAGATACTT GTCCTTAACT CTGAGATAAA GTATATACAC
 ATGTAACTCA ACTTGTTTAA AAGGAAAAAA AGGGGAAGAA GAAAAGAAAC TTCCACTTTA
 GAATCCACAT TTTCAAAGGC
 Y
 TCCGTTATTT ACACCATTGC TGGTAAGAGA ATTTTTCTCT ACTATATTTG CTTGAAAGAA
 TTAAAGGTGT AGGGCTGAAA AGATTCTTAG AAATTATGTA GTTTACGATC CTCAAAGGTG
 AGAAAAATGA AGCCCAGAAG AGAAGGCCTT CCAGGAAAAT TCCAGAGCCG GACGTAGACC
 CAGTACATTG TTTCTGTTTT TATTTTGAGA CGAAGTCTTA CTCTATCGCC CAGGCTGGAG
 TGCAGTGGAG TTATTTCAAC TCACTGCAAC CTCCGCCTCC TGGGTTCAAG CTATTCTCCT
 GCCTCAGCCT CATGAGTAGC TGCGATTACA GGCACCCACC ACCATGCCCG GCTAATTTTT
 GTATTTTTAG TAGAGACGGG GTTTCACCAT GTTGGCCAGG CTGGTCTCGA ACTCCTGACC
 TCAAATGATC CGCCTGCCTC GACCTCCCAA AGTTCTGGGA TTACAGGCGT GAGCCACCGC
 GCCCGGCCGA CCTGCTAAGT

  Submitted Frequency for ss85871639 back to top
There is no frequency submission for ss85871639.


  dbSNP summary of Genotypes for ss85871639 back to top
No sufficient data to compute Hardy-weinberg probability for ss85871639.


  Submitted individual genotype for ss85871639 back to top
There is no individual genotype data for ss85871639.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement