Submitted SNP(ss) Details: ss8819703

Submitted SNP(ss) Details: ss8819703

Submitter
Handle	SNP500CANCER
Submitter SNP ID	CRP-03
RefSNP(rs#)	rs1205
Submitted Batch ID	08272003_update
Submitted Date	Oct 28, 2003
Publication Cited	N.D.
First entry to dbSNP	May 30 2003 12:00:00:000AM

Resource Links
GenBank Accession	NT_004668.13
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	CRP-03

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	SEQUENCING
Ascertainment Samplesize	204
Population	P1

Allele
Observed Allele	A/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	Unknown

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Comment

Platform: Sequencing Primer F: CACAAGAGTGGACGTGAA, Temp: 53.58, GC Content:50, Product Size: 374 Primer R: CTTATAGACCTGGGCAGT, Temp: 49.92, GC Content:50
Platform: TaqMan Forward primer: GCTCCTCCACTTCCAGTTTGG, Amount: 900 nM Reverse primer: GTAGCCATCTTGTTTGCCACATG, Amount: 900 nM Probe 1: TGTCCTCACAGTCTC, Amount: 200 nM Probe 2: TTCTGTCCTCATAGTCTC, Amount: 200 nM Annealing temperature: 60 C

Fasta sequence (Legend)

 TCTGGAGGAT AGTTGGATAG TTACGTGTTC CTAGCAGGAC CAACTACAGT CTTCCCAAGG
 ATTGAGTTAT GGACTTTGGG AGTGAGACAT CTTCTTGCTG CTGGATTTCC AAGCTGAGAG
 GACGTGAACC TGGGACCACC AGTAGCCATC TTGTTTGCCA CATGGWGAGA GACT
 R
 TGAGGACAGA AGCCAAACTG GAAGTGGAGG AGCCAAGGGA TTGACAAACA ACAGAGCCTT
 GACCACGTGG AGTCTCTGAA TCAGCCTTGT CTGGAACCAG ATCTACACCT GGACTGCCCA
 GGTCTATAAG CCAATAAAGC CCCTGTTTAC TTGAGTGAGT CCAAGCTG

Submitted Frequency for ss8819703

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
PAC1 - MULTI-NATIONAL	48	G=0.54200000	A=0.45800000	0.496 +/-0.017	A/G=0.41700000 G/G=0.33300000 A/A=0.25000000	0.417	08272003	SNP500CANCER
AFR1 - MULTI-NATIONAL	48	G=0.89600003	A=0.10400000	0.186 +/-0.099	G/G=0.79200000 A/G=0.20800000 A/A=0.00000000	0.208	08272003	SNP500CANCER
P1 - MULTI-NATIONAL	200	G=0.69999999	A=0.30000001	0.420 +/-0.037	G/G=0.49000001 A/G=0.41999999 A/A=0.09000000	0.420	08272003	SNP500CANCER
CAUC1 - MULTI-NATIONAL	62	G=0.69400001	A=0.30599999	0.425 +/-0.064	G/G=0.48400000 A/G=0.41900000 A/A=0.09700000	0.419	08272003	SNP500CANCER
HISP1 - MULTI-NATIONAL	42	G=0.66700000	A=0.33300000	0.444 +/-0.069	A/G=0.66700000 G/G=0.33300000 A/A=0.00000000	0.667	08272003	SNP500CANCER

dbSNP summary of Genotypes for ss8819703

No sufficient data to compute Hardy-weinberg probability for ss8819703.

Submitted individual genotype for ss8819703

There is no individual genotype data for ss8819703.

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