NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss89153528           
Submitter
HandleBCMHGSC_JDW
Submitter SNP IDJWB-0559783
RefSNP(rs#)rs12425225
Submitted Batch IDJWB_snps_no_apoe
Submitted DateFeb 26, 2008
Publication Cited[1] The Complete Genome of a Single Individual by Massively Parallel DNA Sequencing
First entry to dbSNPFeb 26 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodJWB_SNP_DISCOVERY
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
Ref=C|Alt=A|Chr=chr12|Position=51011568|Strand=+|dbSNP=+|Score=45|Reads=2:2:7

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss89153528|allelePos=251|len=501|taxid=9606|alleles='C/A'|mol=Genomic
 GCTGTTCCAG TGACCTGGAG TAAGTTTATT AAGAAGCAAA GCCCTTAGGC CACAATGGTG
 GATTTGGAGG ATAAGTTAGA AGCAAAGCAA TGTTGTTTTA AGCCACTGAG ATTTTAGGGC
 TGTTTGTTGC CACTAAATAG CCTAGCTCAT CCTAGCTGAC ACCCTCCCAC ACTGGGTTTT
 GGGAAGATTA AACAAACTGA TGCCTGGAAA GCACCGAGCA CATTCTGCCC ATAACACATA
 CTTGATACAA
 M
 TTAGTGTTTT CTGTGCTTCT CCATCTAATG TCCCATGGGC ATTTCAACCT CAGCATACCC
 AAAACTGAGC TCGGACACAC ATCCACAAAT ACCATGCCTG CACTTCCTCC TGCTCTCCAT
 GCAGTGAGAT TGTACCACCT CCCAGTCTCT CTCACAAGCT GCCAACCTGA GAACCATCAT
 CTGGACCACT CCTTTTCTCT CCCCTGACAT CCAATAAATT GATGGGCCTT CTAGATACCT
 TGTGGTTCTT

  Submitted Frequency for ss89153528 back to top
There is no frequency submission for ss89153528.


  dbSNP summary of Genotypes for ss89153528 back to top
No sufficient data to compute Hardy-weinberg probability for ss89153528.


  Submitted individual genotype for ss89153528 back to top
There is no individual genotype data for ss89153528.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement