Submitted SNP(ss) Details: ss93373333

Submitted SNP(ss) Details: ss93373333

Submitter
Handle	BCMHGSC_JDW
Submitter SNP ID	JWB-2089686
RefSNP(rs#)	rs660560
Submitted Batch ID	JWB_snps_no_apoe
Submitted Date	Feb 26, 2008
Publication Cited	[1] The Complete Genome of a Single Individual by Massively Parallel DNA Sequencing
First entry to dbSNP	Feb 26 2008 12:00:00:000AM

Resource Links
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	JWB_SNP_DISCOVERY
Ascertainment Samplesize	2
Population	N.D.

Allele
Observed Allele	A/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 12
Genotype Submission	N.D.
Haplotype	N.D.

Comment
Ref=A\|Alt=G\|Chr=chr6\|Position=4070940\|Strand=+\|dbSNP=+\|Score=94\|Reads=4:4:4

Fasta sequence (Legend)

 CCTTCTGTCA GGCTGGGTGT TTCCACAGCC ACCACCAGCA GTGCCTCCTT GTCCTGCCAC
 TTCCCTGGTC TTCCGCACCA GATTCATCCA GGGCATCCGT CTGAATGGCA GTGGATGGAA
 GACCAACCAG TGAGACCTAT GGGTCAACCC TGGTTTGAAT CTTGTATTCT GGACAGTGAG
 TTCAGGGCTG TAAACCAGCC GCAGTCTTAG AGATTAGGTT GGGTGACTGA GCACATGCTG
 CAATATCACA
 R
 CAAGTGGGAA TTACAGATTT GGCAGGAATA AAGAGAAAAG CCTTCATGAC CTCCTCCTGT
 GTTTACAAGA CTCCTCCGAG TCTCCTACCT TCAGCGTTCA TGGAAATCTC CCATTCCTCT
 GGCTGGATGA GAATTTGCTA AATTCCTCTG CCTCAGTGCA AGATAATTTT GTTTACAACT
 ATAGCTCACT TTTATGTTTT CCAGTCAAAT CTCATGAGAC CAGCAGGATG AACAGGTAAC
 AGAGGTCAAA

Submitted Frequency for ss93373333

There is no frequency submission for ss93373333.

dbSNP summary of Genotypes for ss93373333

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
HapMap-CEU	226	226	A=0.63716817	G=0.36283186	A/G=0.42477876 A/A=0.42477876 G/G=0.15044248	Pr(chiSq=0.747,df=1) =0.403	Genotype Freq.
HapMap-HCB - EAST ASIA	86	86	A=0.68604654	G=0.31395349	A/A=0.51162791 A/G=0.34883720 G/G=0.13953489	Pr(chiSq=1.556,df=1) =0.251	Genotype Freq.
HapMap-JPT	172	172	A=0.68604654	G=0.31395349	A/G=0.53488374 A/A=0.41860464 G/G=0.04651163	Pr(chiSq=5.023,df=1) =0.025	Genotype Freq.
HapMap-YRI	226	226	A=0.62831861	G=0.37168142	A/G=0.51327431 A/A=0.37168142 G/G=0.11504425	Pr(chiSq=1.106,df=1) =0.294	Genotype Freq.
HAPMAP-ASW	98	98	A=0.72448981	G=0.27551019	A/A=0.51020408 A/G=0.42857143 G/G=0.06122449	Pr(chiSq=0.265,df=1) =0.655	Genotype Freq.
HAPMAP-CHB	82	82	A=0.65853661	G=0.34146342	A/G=0.53658539 A/A=0.39024389 G/G=0.07317073	Pr(chiSq=1.529,df=1) =0.251	Genotype Freq.
HAPMAP-CHD	170	170	A=0.65294117	G=0.34705883	A/A=0.47058824 A/G=0.36470589 G/G=0.16470589	Pr(chiSq=3.242,df=1) =0.100	Genotype Freq.
HAPMAP-GIH	176	176	A=0.76704544	G=0.23295455	A/A=0.60227275 A/G=0.32954547 G/G=0.06818182	Pr(chiSq=0.534,df=1) =0.479	Genotype Freq.
HAPMAP-LWK	180	180	A=0.66111112	G=0.33888888	A/G=0.47777778 A/A=0.42222223 G/G=0.10000000	Pr(chiSq=0.395,df=1) =0.584	Genotype Freq.
HAPMAP-MEX	100	100	A=0.67000002	G=0.33000001	A/G=0.46000001 A/A=0.44000000 G/G=0.10000000	Pr(chiSq=0.081,df=1) =1.000	Genotype Freq.
HAPMAP-MKK	286	286	A=0.73426574	G=0.26573426	A/A=0.54545456 A/G=0.37762237 G/G=0.07692308	Pr(chiSq=0.149,df=1) =0.752	Genotype Freq.
HAPMAP-TSI	176	176	A=0.60227275	G=0.39772728	A/G=0.52272725 A/A=0.34090909 G/G=0.13636364	Pr(chiSq=0.730,df=1) =0.403	Genotype Freq.

Submitted individual genotype for ss93373333

There is no individual genotype data for ss93373333.

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