Method Detail

Method Detail

Submitter Method Handle:	COMPLETE_GENOMICS
Submitter Method ID:	COMPLETE GENOMICS SEQUENCING
Submitted method description:

	Sequencing was performed using combinatorial probe anchor ligation (cPAL) to
	assay patterned nanoarrays of self-assembling DNA nanoballs (DNBs). Reads
	were mapped to the human genome reference assembly (NCBI build 36) using
	a custom alignment algorithm that accommodates the cPAL/DNB read structure.
	Mapped reads were assembled into a best-fit diploid sequence with a custom
	software suite employing both Bayesian and de Bruijn graph techniques.
	Variations were called through comparison back to reference.

This method was used in the following submission:

Submitter Handle	Batch Type	Submitter batch id	Release build id
COMPLETE_GENOMICS	Genotype	NA07022_snpinduse_chr1	131
COMPLETE_GENOMICS	Genotype	NA07022_snpinduse_chr2	131
COMPLETE_GENOMICS	Genotype	NA07022_snpinduse_chr3	131
COMPLETE_GENOMICS	Genotype	NA07022_snpinduse_chr4	131
COMPLETE_GENOMICS	Genotype	NA07022_snpinduse_chr5	131
COMPLETE_GENOMICS	Genotype	NA07022_snpinduse_chr6	131
COMPLETE_GENOMICS	Genotype	NA07022_snpinduse_chr7	131
COMPLETE_GENOMICS	Genotype	NA07022_snpinduse_chr8	131
COMPLETE_GENOMICS	Genotype	NA07022_snpinduse_chr9	131
COMPLETE_GENOMICS	Genotype	NA07022_snpinduse_chrM	131
COMPLETE_GENOMICS	Genotype	NA07022_snpinduse_chrX	131
COMPLETE_GENOMICS	Genotype	NA07022_snpinduse_chrY	131
COMPLETE_GENOMICS	Genotype	NA07022_snpinduse_chr10	131
COMPLETE_GENOMICS	Genotype	NA07022_snpinduse_chr11	131
COMPLETE_GENOMICS	Genotype	NA07022_snpinduse_chr12	131
COMPLETE_GENOMICS	Genotype	NA07022_snpinduse_chr13	131
COMPLETE_GENOMICS	Genotype	NA07022_snpinduse_chr14	131
COMPLETE_GENOMICS	Genotype	NA07022_snpinduse_chr15	131
COMPLETE_GENOMICS	Genotype	NA07022_snpinduse_chr16	131
COMPLETE_GENOMICS	Genotype	NA07022_snpinduse_chr17	131
COMPLETE_GENOMICS	Genotype	NA07022_snpinduse_chr18	131
COMPLETE_GENOMICS	Genotype	NA07022_snpinduse_chr19	131
COMPLETE_GENOMICS	Genotype	NA07022_snpinduse_chr20	131
COMPLETE_GENOMICS	Genotype	NA07022_snpinduse_chr21	131
COMPLETE_GENOMICS	Genotype	NA07022_snpinduse_chr22	131
COMPLETE_GENOMICS	Genotype	NA19240_snpinduse_chr1	131
COMPLETE_GENOMICS	Genotype	NA19240_snpinduse_chr2	131
COMPLETE_GENOMICS	Genotype	NA19240_snpinduse_chr3	131
COMPLETE_GENOMICS	Genotype	NA19240_snpinduse_chr4	131
COMPLETE_GENOMICS	Genotype	NA19240_snpinduse_chr5	131
COMPLETE_GENOMICS	Genotype	NA19240_snpinduse_chrM	131
COMPLETE_GENOMICS	Genotype	NA19240_snpinduse_chr6	131
COMPLETE_GENOMICS	Genotype	NA19240_snpinduse_chr7	131
COMPLETE_GENOMICS	Genotype	NA19240_snpinduse_chr8	131
COMPLETE_GENOMICS	Genotype	NA19240_snpinduse_chr9	131
COMPLETE_GENOMICS	Genotype	NA19240_snpinduse_chrX	131
COMPLETE_GENOMICS	Genotype	NA19240_snpinduse_chr10	131
COMPLETE_GENOMICS	Genotype	NA19240_snpinduse_chr11	131
COMPLETE_GENOMICS	Genotype	NA19240_snpinduse_chr12	131
COMPLETE_GENOMICS	Genotype	NA19240_snpinduse_chr13	131
COMPLETE_GENOMICS	Genotype	NA19240_snpinduse_chr14	131
COMPLETE_GENOMICS	Genotype	NA19240_snpinduse_chr15	131
COMPLETE_GENOMICS	Genotype	NA19240_snpinduse_chr16	131
COMPLETE_GENOMICS	Genotype	NA19240_snpinduse_chr17	131
COMPLETE_GENOMICS	Genotype	NA19240_snpinduse_chr18	131
COMPLETE_GENOMICS	Genotype	NA19240_snpinduse_chr19	131
COMPLETE_GENOMICS	Genotype	NA19240_snpinduse_chr20	131
COMPLETE_GENOMICS	Genotype	NA19240_snpinduse_chr21	131
COMPLETE_GENOMICS	Genotype	NA19240_snpinduse_chr22	131
COMPLETE_GENOMICS	Genotype	NA20431_snpinduse_chr1	131
COMPLETE_GENOMICS	Genotype	NA20431_snpinduse_chr2	131
COMPLETE_GENOMICS	Genotype	NA20431_snpinduse_chr3	131
COMPLETE_GENOMICS	Genotype	NA20431_snpinduse_chr4	131
COMPLETE_GENOMICS	Genotype	NA20431_snpinduse_chr5	131
COMPLETE_GENOMICS	Genotype	NA20431_snpinduse_chr6	131
COMPLETE_GENOMICS	Genotype	NA20431_snpinduse_chr7	131
COMPLETE_GENOMICS	Genotype	NA20431_snpinduse_chr8	131
COMPLETE_GENOMICS	Genotype	NA20431_snpinduse_chr9	131
COMPLETE_GENOMICS	Genotype	NA20431_snpinduse_chrM	131
COMPLETE_GENOMICS	Genotype	NA20431_snpinduse_chrX	131
COMPLETE_GENOMICS	Genotype	NA20431_snpinduse_chrY	131
COMPLETE_GENOMICS	Genotype	NA20431_snpinduse_chr10	131
COMPLETE_GENOMICS	Genotype	NA20431_snpinduse_chr11	131
COMPLETE_GENOMICS	Genotype	NA20431_snpinduse_chr12	131
COMPLETE_GENOMICS	Genotype	NA20431_snpinduse_chr13	131
COMPLETE_GENOMICS	Genotype	NA20431_snpinduse_chr14	131
COMPLETE_GENOMICS	Genotype	NA20431_snpinduse_chr15	131
COMPLETE_GENOMICS	Genotype	NA20431_snpinduse_chr16	131
COMPLETE_GENOMICS	Genotype	NA20431_snpinduse_chr17	131
COMPLETE_GENOMICS	Genotype	NA20431_snpinduse_chr18	131
COMPLETE_GENOMICS	Genotype	NA20431_snpinduse_chr19	131
COMPLETE_GENOMICS	Genotype	NA20431_snpinduse_chr20	131
COMPLETE_GENOMICS	Genotype	NA20431_snpinduse_chr21	131
COMPLETE_GENOMICS	Genotype	NA20431_snpinduse_chr22	131
COMPLETE_GENOMICS	Assay	NA07022_snpassay_chr1	131
COMPLETE_GENOMICS	Assay	NA07022_snpassay_chr3	131
COMPLETE_GENOMICS	Assay	NA07022_snpassay_chr4	131
COMPLETE_GENOMICS	Assay	NA07022_snpassay_chr5	131
COMPLETE_GENOMICS	Assay	NA07022_snpassay_chr6	131
COMPLETE_GENOMICS	Assay	NA07022_snpassay_chr7	131
COMPLETE_GENOMICS	Assay	NA07022_snpassay_chr8	131
COMPLETE_GENOMICS	Assay	NA07022_snpassay_chrY	131
COMPLETE_GENOMICS	Assay	NA07022_snpassay_chrX	131
COMPLETE_GENOMICS	Assay	NA19240_snpassay_chr1	131
COMPLETE_GENOMICS	Assay	NA19240_snpassay_chr2	131
COMPLETE_GENOMICS	Assay	NA19240_snpassay_chr3	131
COMPLETE_GENOMICS	Assay	NA19240_snpassay_chr4	131
COMPLETE_GENOMICS	Assay	NA19240_snpassay_chr6	131
COMPLETE_GENOMICS	Assay	NA19240_snpassay_chr7	131
COMPLETE_GENOMICS	Assay	NA07022_snpassay_chr9	131
COMPLETE_GENOMICS	Assay	NA19240_snpassay_chr8	131
COMPLETE_GENOMICS	Assay	NA07022_snpassay_chr2	131
COMPLETE_GENOMICS	Assay	NA07022_snpassay_chrM	131
COMPLETE_GENOMICS	Assay	NA19240_snpassay_chr5	131
COMPLETE_GENOMICS	Assay	NA19240_snpassay_chrM	131
COMPLETE_GENOMICS	Assay	NA19240_snpassay_chr9	131
COMPLETE_GENOMICS	Assay	NA19240_snpassay_chrX	131
COMPLETE_GENOMICS	Assay	NA20431_snpassay_chr1	131
COMPLETE_GENOMICS	Assay	NA20431_snpassay_chr2	131
COMPLETE_GENOMICS	Assay	NA20431_snpassay_chr3	131
COMPLETE_GENOMICS	Assay	NA20431_snpassay_chr4	131
COMPLETE_GENOMICS	Assay	NA20431_snpassay_chr5	131
COMPLETE_GENOMICS	Assay	NA20431_snpassay_chr6	131
COMPLETE_GENOMICS	Assay	NA20431_snpassay_chr7	131
COMPLETE_GENOMICS	Assay	NA20431_snpassay_chr8	131
COMPLETE_GENOMICS	Assay	NA20431_snpassay_chr9	131
COMPLETE_GENOMICS	Assay	NA20431_snpassay_chrM	131
COMPLETE_GENOMICS	Assay	NA20431_snpassay_chrX	131
COMPLETE_GENOMICS	Assay	NA20431_snpassay_chrY	131
COMPLETE_GENOMICS	Assay	NA07022_snpassay_chr10	131
COMPLETE_GENOMICS	Assay	NA07022_snpassay_chr11	131
COMPLETE_GENOMICS	Assay	NA07022_snpassay_chr12	131
COMPLETE_GENOMICS	Assay	NA07022_snpassay_chr13	131
COMPLETE_GENOMICS	Assay	NA07022_snpassay_chr14	131
COMPLETE_GENOMICS	Assay	NA07022_snpassay_chr15	131
COMPLETE_GENOMICS	Assay	NA07022_snpassay_chr16	131
COMPLETE_GENOMICS	Assay	NA07022_snpassay_chr17	131
COMPLETE_GENOMICS	Assay	NA07022_snpassay_chr18	131
COMPLETE_GENOMICS	Assay	NA07022_snpassay_chr19	131
COMPLETE_GENOMICS	Assay	NA07022_snpassay_chr20	131
COMPLETE_GENOMICS	Assay	NA07022_snpassay_chr21	131
COMPLETE_GENOMICS	Assay	NA07022_snpassay_chr22	131
COMPLETE_GENOMICS	Assay	NA19240_snpassay_chr10	131
COMPLETE_GENOMICS	Assay	NA19240_snpassay_chr11	131
COMPLETE_GENOMICS	Assay	NA19240_snpassay_chr12	131
COMPLETE_GENOMICS	Assay	NA19240_snpassay_chr13	131
COMPLETE_GENOMICS	Assay	NA19240_snpassay_chr14	131
COMPLETE_GENOMICS	Assay	NA19240_snpassay_chr15	131
COMPLETE_GENOMICS	Assay	NA19240_snpassay_chr16	131
COMPLETE_GENOMICS	Assay	NA19240_snpassay_chr17	131
COMPLETE_GENOMICS	Assay	NA19240_snpassay_chr18	131
COMPLETE_GENOMICS	Assay	NA19240_snpassay_chr19	131
COMPLETE_GENOMICS	Assay	NA19240_snpassay_chr20	131
COMPLETE_GENOMICS	Assay	NA19240_snpassay_chr21	131
COMPLETE_GENOMICS	Assay	NA19240_snpassay_chr22	131
COMPLETE_GENOMICS	Assay	NA20431_snpassay_chr10	131
COMPLETE_GENOMICS	Assay	NA20431_snpassay_chr11	131
COMPLETE_GENOMICS	Assay	NA20431_snpassay_chr12	131
COMPLETE_GENOMICS	Assay	NA20431_snpassay_chr13	131
COMPLETE_GENOMICS	Assay	NA20431_snpassay_chr14	131
COMPLETE_GENOMICS	Assay	NA20431_snpassay_chr15	131
COMPLETE_GENOMICS	Assay	NA20431_snpassay_chr16	131
COMPLETE_GENOMICS	Assay	NA20431_snpassay_chr17	131
COMPLETE_GENOMICS	Assay	NA20431_snpassay_chr18	131
COMPLETE_GENOMICS	Assay	NA20431_snpassay_chr19	131
COMPLETE_GENOMICS	Assay	NA20431_snpassay_chr20	131
COMPLETE_GENOMICS	Assay	NA20431_snpassay_chr21	131
COMPLETE_GENOMICS	Assay	NA20431_snpassay_chr22	131

Disclaimer Privacy statement