NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Method Detail
Submitter Method Handle: CSHL
Submitter Method ID: F23_WHOLE_GENOME_SEQUENCING
Submitted method description:
Genomic libraries were sequenced on HiSeq2000 sequencers (Illumina Inc, San Diego CA). Reads were aligned with BWA (Li et al 2009) and SNVs were called with GATK (McKenna et al 2010).

This method was used in the following submission:

Submitter Handle Batch Type Submitter batch id Release build id
CSHL Assay F23_WholeGenome_SNVs 150

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement