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D4, zinc and double PHD fingers family 2 (predicted) [Rattus norvegicus]

GenBank: EDM12541.1

Identical Proteins FASTA Graphics 

LOCUS       EDM12541                 391 aa            linear   ROD 26-JUL-2016
DEFINITION  D4, zinc and double PHD fingers family 2 (predicted) [Rattus
            norvegicus].
ACCESSION   EDM12541
VERSION     EDM12541.1
DBLINK      BioProject: PRJNA13999
            BioSample: SAMN03000701
DBSOURCE    accession CH473953.1
KEYWORDS    .
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (residues 1 to 391)
  AUTHORS   Florea,L., Di Francesco,V., Miller,J., Turner,R., Yao,A.,
            Harris,M., Walenz,B., Mobarry,C., Merkulov,G.V., Charlab,R.,
            Dew,I., Deng,Z., Istrail,S., Li,P. and Sutton,G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res. 15 (1), 54-66 (2005)
   PUBMED   15632090
REFERENCE   2  (residues 1 to 391)
  AUTHORS   Mural,R.J., Li,P.W., Adams,M.D., Amanatides,P.G., Baden-Tillson,H.,
            Barnstead,M., Chin,S.H., Dew,I., Evans,C.A., Ferriera,S.,
            Flanigan,M., Fosler,C., Glodek,A., Gu,Z., Holt,R.A., Jennings,D.,
            Kraft,C.L., Lu,F., Nguyen,T., Nusskern,D.R., Pfannkoch,C.M.,
            Sitter,C., Sutton,G.G., Venter,J.C., Wang,Z., Woodage,T.,
            Zheng,X.H. and Zhong,F.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUL-2005) Celera Genomics, 45 W. Gude Dr., Rockville,
            MD 20850, USA
COMMENT     Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..391
                     /organism="Rattus norvegicus"
                     /strain="BN; Sprague-Dawley"
                     /db_xref="taxon:10116"
                     /chromosome="1"
     Protein         1..391
                     /product="D4, zinc and double PHD fingers family 2
                     (predicted)"
     Region          13..75
                     /region_name="DPF1-3_N"
                     /note="DPF1-3, N-terminal; pfam14051"
                     /db_xref="CDD:464074"
     Region          <201..233
                     /region_name="SFP1"
                     /note="Putative transcriptional repressor regulating G2/M
                     transition [Transcription / Cell division and chromosome
                     partitioning]; COG5189"
                     /db_xref="CDD:227516"
     Region          272..327
                     /region_name="PHD1_DPF2_like"
                     /note="PHD finger 1 found in D4, zinc and double PHD
                     fingers family 2 (DPF2); cd15691"
                     /db_xref="CDD:277161"
     Site            order(272,274..275,277,295,300..302,307..309,322,324..326)
                     /site_type="other"
                     /note="histone H3 binding site [polypeptide binding]"
                     /db_xref="CDD:277161"
     Site            order(309..310,312..313,316..317,320,322..323,325,327)
                     /site_type="other"
                     /note="PHD2 interface [polypeptide binding]"
                     /db_xref="CDD:277161"
     Region          329..374
                     /region_name="PHD2_d4"
                     /note="PHD finger 2 found in d4 gene family proteins;
                     cd15530"
                     /db_xref="CDD:277005"
     Site            order(329,344..350)
                     /site_type="other"
                     /note="PHD1 interface [polypeptide binding]"
                     /db_xref="CDD:277005"
     Site            order(336,339..346,354,364..369)
                     /site_type="other"
                     /note="histone H3 binding site [polypeptide binding]"
                     /db_xref="CDD:277005"
     CDS             1..391
                     /gene="Dpf2_predicted"
                     /locus_tag="rCG_48464"
                     /coded_by="complement(join(CH473953.1:17192220..17192296,
                     CH473953.1:17195087..17195168,
                     CH473953.1:17195946..17196058,
                     CH473953.1:17196204..17196332,
                     CH473953.1:17196462..17196599,
                     CH473953.1:17198080..17198158,
                     CH473953.1:17198291..17198383,
                     CH473953.1:17199326..17199489,
                     CH473953.1:17200297..17200404,
                     CH473953.1:17200787..17200947,
                     CH473953.1:17206119..17206150))"
                     /note="gene_id=rCG48464.0 transcript_id=rCT48464.0
                     protein_id=rCP48602.0"
                     /db_xref="GeneID:361711"
ORIGIN      
        1 maavvenvvk llgeqyykda meqchnynar lcaersvrlp fldsqtgvaq sncyiwmekr
       61 hrgpglasgq lysyparrwr kkrrahpped prlsfpsikp dtdqtlkkeg lisqdgssle
      121 allrtdplek rgapdprvdd dslgefpvtn srarkrilep ddflddldde dyeedtpkrr
      181 gkgkskskgv ssarkkldas iledrdkpya cdicgkrykn rpglsyhyah shlaeeeged
      241 kedsqpptpv sqrseeqksk kgpdglalpn nycdfclgds kinkktgqpe elvscsdcgr
      301 sghpsclqft pvmmaavkty rwqcieckcc nlcgtsendd qllfcddcdr gyhmycltps
      361 mseppegsws chlcldllke kasiyqnqns s
//
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