LOCUS EDM12541 391 aa linear ROD 26-JUL-2016
DEFINITION D4, zinc and double PHD fingers family 2 (predicted) [Rattus
norvegicus].
ACCESSION EDM12541
VERSION EDM12541.1
DBLINK BioProject: PRJNA13999
BioSample: SAMN03000701
DBSOURCE accession CH473953.1
KEYWORDS .
SOURCE Rattus norvegicus (Norway rat)
ORGANISM Rattus norvegicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
REFERENCE 1 (residues 1 to 391)
AUTHORS Florea,L., Di Francesco,V., Miller,J., Turner,R., Yao,A.,
Harris,M., Walenz,B., Mobarry,C., Merkulov,G.V., Charlab,R.,
Dew,I., Deng,Z., Istrail,S., Li,P. and Sutton,G.
TITLE Gene and alternative splicing annotation with AIR
JOURNAL Genome Res. 15 (1), 54-66 (2005)
PUBMED 15632090
REFERENCE 2 (residues 1 to 391)
AUTHORS Mural,R.J., Li,P.W., Adams,M.D., Amanatides,P.G., Baden-Tillson,H.,
Barnstead,M., Chin,S.H., Dew,I., Evans,C.A., Ferriera,S.,
Flanigan,M., Fosler,C., Glodek,A., Gu,Z., Holt,R.A., Jennings,D.,
Kraft,C.L., Lu,F., Nguyen,T., Nusskern,D.R., Pfannkoch,C.M.,
Sitter,C., Sutton,G.G., Venter,J.C., Wang,Z., Woodage,T.,
Zheng,X.H. and Zhong,F.
TITLE Direct Submission
JOURNAL Submitted (05-JUL-2005) Celera Genomics, 45 W. Gude Dr., Rockville,
MD 20850, USA
COMMENT Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..391
/organism="Rattus norvegicus"
/strain="BN; Sprague-Dawley"
/db_xref="taxon:10116"
/chromosome="1"
Protein 1..391
/product="D4, zinc and double PHD fingers family 2
(predicted)"
Region 13..75
/region_name="DPF1-3_N"
/note="DPF1-3, N-terminal; pfam14051"
/db_xref="CDD:464074"
Region <201..233
/region_name="SFP1"
/note="Putative transcriptional repressor regulating G2/M
transition [Transcription / Cell division and chromosome
partitioning]; COG5189"
/db_xref="CDD:227516"
Region 272..327
/region_name="PHD1_DPF2_like"
/note="PHD finger 1 found in D4, zinc and double PHD
fingers family 2 (DPF2); cd15691"
/db_xref="CDD:277161"
Site order(272,274..275,277,295,300..302,307..309,322,324..326)
/site_type="other"
/note="histone H3 binding site [polypeptide binding]"
/db_xref="CDD:277161"
Site order(309..310,312..313,316..317,320,322..323,325,327)
/site_type="other"
/note="PHD2 interface [polypeptide binding]"
/db_xref="CDD:277161"
Region 329..374
/region_name="PHD2_d4"
/note="PHD finger 2 found in d4 gene family proteins;
cd15530"
/db_xref="CDD:277005"
Site order(329,344..350)
/site_type="other"
/note="PHD1 interface [polypeptide binding]"
/db_xref="CDD:277005"
Site order(336,339..346,354,364..369)
/site_type="other"
/note="histone H3 binding site [polypeptide binding]"
/db_xref="CDD:277005"
CDS 1..391
/gene="Dpf2_predicted"
/locus_tag="rCG_48464"
/coded_by="complement(join(CH473953.1:17192220..17192296,
CH473953.1:17195087..17195168,
CH473953.1:17195946..17196058,
CH473953.1:17196204..17196332,
CH473953.1:17196462..17196599,
CH473953.1:17198080..17198158,
CH473953.1:17198291..17198383,
CH473953.1:17199326..17199489,
CH473953.1:17200297..17200404,
CH473953.1:17200787..17200947,
CH473953.1:17206119..17206150))"
/note="gene_id=rCG48464.0 transcript_id=rCT48464.0
protein_id=rCP48602.0"
/db_xref="GeneID:361711"
ORIGIN
1 maavvenvvk llgeqyykda meqchnynar lcaersvrlp fldsqtgvaq sncyiwmekr
61 hrgpglasgq lysyparrwr kkrrahpped prlsfpsikp dtdqtlkkeg lisqdgssle
121 allrtdplek rgapdprvdd dslgefpvtn srarkrilep ddflddldde dyeedtpkrr
181 gkgkskskgv ssarkkldas iledrdkpya cdicgkrykn rpglsyhyah shlaeeeged
241 kedsqpptpv sqrseeqksk kgpdglalpn nycdfclgds kinkktgqpe elvscsdcgr
301 sghpsclqft pvmmaavkty rwqcieckcc nlcgtsendd qllfcddcdr gyhmycltps
361 mseppegsws chlcldllke kasiyqnqns s
//