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calcium-binding EF hand family protein [Arabidopsis thaliana]

NCBI Reference Sequence: NP_194934.1

Identical Proteins FASTA Graphics 

LOCUS       NP_194934                498 aa            linear   PLN 20-OCT-2022
DEFINITION  calcium-binding EF hand family protein [Arabidopsis thaliana].
ACCESSION   NP_194934
VERSION     NP_194934.1
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
DBSOURCE    REFSEQ: accession NM_119358.4
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (residues 1 to 498)
  AUTHORS   Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
            Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
            Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
            Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
            Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
            Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
            Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
            Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
            Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
            Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
            Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
            Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
            Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
            Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
            Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
            Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
            Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
            Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
            Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
            Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
            Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
            Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
            Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
            Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
            Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
            Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
            Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
            Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
            Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
            Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
            Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
            Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
            Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
            Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
            Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
            Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
            Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
            Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
            Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
            Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
            Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
            Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
            Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
            Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
            Martienssen,R. and McCombie,W.R.
  TITLE     Sequence and analysis of chromosome 4 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 402 (6763), 769-777 (1999)
   PUBMED   10617198
REFERENCE   2  (residues 1 to 498)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 498)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (residues 1 to 498)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            The reference sequence is identical to AEE85999.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..498
                     /organism="Arabidopsis thaliana"
                     /db_xref="taxon:3702"
                     /chromosome="4"
                     /ecotype="Columbia"
     Protein         1..498
                     /product="calcium-binding EF hand family protein"
                     /calculated_mol_wt=55284
     Region          216..273
                     /region_name="EFh"
                     /note="EF-hand, calcium binding motif; A diverse
                     superfamily of calcium sensors and calcium signal
                     modulators; most examples in this alignment model have 2
                     active canonical EF hands. Ca2+ binding induces a
                     conformational change in the EF-hand motif, leading to...;
                     cd00051"
                     /db_xref="CDD:238008"
     Site            order(222,224,226,233,256,258,260,267)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:238008"
     Region          248..469
                     /region_name="EFh_MICU"
                     /note="EF-hand, calcium binding motif, found in
                     mitochondrial calcium uptake proteins MICU1, MICU2, MICU3,
                     and similar proteins; cd15900"
                     /db_xref="CDD:320080"
     Region          248..276
                     /region_name="EF-hand motif"
                     /note="EF-hand motif [structural motif]"
                     /db_xref="CDD:320080"
     Site            order(256,258,260,267,450,452,454,461)
                     /site_type="other"
                     /note="Ca binding site [ion binding]"
                     /db_xref="CDD:320080"
     Region          303..333
                     /region_name="EF-hand motif"
                     /note="EF-hand motif [structural motif]"
                     /db_xref="CDD:320080"
     Region          328..464
                     /region_name="FRQ1"
                     /note="Ca2+-binding protein, EF-hand superfamily [Signal
                     transduction mechanisms]; COG5126"
                     /db_xref="CDD:444056"
     Region          404..433
                     /region_name="EF-hand motif"
                     /note="EF-hand motif [structural motif]"
                     /db_xref="CDD:320080"
     Region          441..469
                     /region_name="EF-hand motif"
                     /note="EF-hand motif [structural motif]"
                     /db_xref="CDD:320080"
     CDS             1..498
                     /locus_tag="AT4G32060"
                     /gene_synonym="F10N7.140; F10N7_140"
                     /coded_by="NM_119358.4:209..1705"
                     /inference="Similar to RNA sequence,
                     EST:INSD:BP782250.1,INSD:ES063827.1,INSD:BP574023.1,
                     INSD:BP612372.1,INSD:ES160852.1,INSD:CB259250.1,
                     INSD:ES074644.1,INSD:BP610004.1,INSD:ES059924.1,
                     INSD:BX834472.1,INSD:BP812347.1,INSD:BP664373.1,
                     INSD:BP644446.1,INSD:BP665077.1,INSD:DR365173.1,
                     INSD:BP608889.1,INSD:DR365172.1,INSD:EG516296.1,
                     INSD:BP583531.1,INSD:EL167144.1,INSD:BP868389.1,
                     INSD:ES038763.1,INSD:ES102164.1,INSD:BP841746.1,
                     INSD:ES058713.1,INSD:BP634439.1,INSD:EL241378.1,
                     INSD:CD531188.1,INSD:BP651625.1,INSD:BP621655.1,
                     INSD:EL093923.1,INSD:BP813477.1,INSD:BP611950.1,
                     INSD:T21541.1,INSD:BP807730.1,INSD:EH865224.1,
                     INSD:ES101471.1,INSD:EL184335.1,INSD:EH807229.1,
                     INSD:CD530682.1,INSD:BP817195.1,INSD:ES013334.1,
                     INSD:R30357.1,INSD:EL024694.1,INSD:BP598804.1,
                     INSD:EL143862.1,INSD:AA728524.1,INSD:BP854639.1,
                     INSD:EL285860.1,INSD:AV548889.1,INSD:BP806106.1,
                     INSD:AA395624.1,INSD:BP661909.1,INSD:T04712.1,
                     INSD:ES077351.1,INSD:AV791399.1,INSD:BP666321.1,
                     INSD:ES056185.1,INSD:BE528765.1,INSD:BE530802.1,
                     INSD:AV831594.1,INSD:U74116.1,INSD:DR365171.1,
                     INSD:EL288639.1,INSD:BP862696.1,INSD:BX837479.1,
                     INSD:BP667490.1,INSD:EL967947.1,INSD:AV805000.1,
                     INSD:EL971662.1,INSD:BP624223.1,INSD:BP853509.1,
                     INSD:ES211128.1,INSD:EG492604.1,INSD:EH991802.1,
                     INSD:BP664189.1,INSD:EL033447.1,INSD:EH821989.1,
                     INSD:BP563613.1,INSD:BP805651.1,INSD:BP601704.1,
                     INSD:EL032904.1,INSD:EL123951.1,INSD:EL336837.1,
                     INSD:EH943784.1,INSD:ES003046.1,INSD:AA597536.1,
                     INSD:AV816891.1,INSD:BP577209.1,INSD:EL970530.1,
                     INSD:ES048863.1,INSD:BP868624.1,INSD:EL181345.1,
                     INSD:EL219906.1,INSD:BP609353.1"
                     /inference="Similar to RNA sequence,
                     mRNA:INSD:BX827714.1,INSD:AY072163.1,INSD:AY122982.1,
                     INSD:BX828846.1"
                     /note="calcium-binding EF hand family protein; FUNCTIONS
                     IN: calcium ion binding; EXPRESSED IN: 24 plant
                     structures; EXPRESSED DURING: 15 growth stages; CONTAINS
                     InterPro DOMAIN/s: EF-Hand 1, calcium-binding site
                     (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249),
                     EF-hand-like domain (InterPro:IPR011992), Calcium-binding
                     EF-hand (InterPro:IPR002048), EF-hand
                     (InterPro:IPR018248); Has 1138 Blast hits to 1114 proteins
                     in 164 species: Archae - 0; Bacteria - 0; Metazoa - 850;
                     Fungi - 83; Plants - 103; Viruses - 0; Other Eukaryotes -
                     102 (source: NCBI BLink)."
                     /db_xref="GeneID:829337"
                     /db_xref="TAIR:AT4G32060"
                     /db_xref="Araport:AT4G32060"
ORIGIN      
        1 mpalshyrsv sslpsvdrsf lliqrlrihg ssssfpessp sasilsgadp lkctvsggsl
       61 akwitgisag salgflywss gssdsisglf ggsnllsfad sstpsvcgvk vgdlkprsfi
      121 pklslpgyss gfifgdayrr kiffnyekrl rlqsppekvf eyfasvrtdk geilmkpadl
      181 mraivpvfpp seshlvregy ltgernpgel rcspseffml fdvdndglis fkeyiffvtl
      241 lsipessfav afkmfdtdnn geidkeefkt vmslmrsqhr qgvghrdglr tglhmtgsve
      301 dgglveyffg kdgsqklkhd kftkfmkdlt eemlrlefah ydykrrgsis akdfalsmva
      361 aadashlskl ldrveslseh phlrdmrisl kefkqfdelr sklgpfslal faygkangll
      421 tmkdfkraas qvcgitlsdn vieiafhvfd snqdgnlsvd eflrvlhrre rdvaqpiakg
      481 lsryfsdgwk gskncsss
//
Feature
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Protein clusters for NP_194934.1

Reference sequence information

  • RefSeq protein isoforms
    See the other reference sequence protein isoform for the AT4G32060 gene (NP_001078476.1).

More about the AT4G32060 gene

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