LOCUS NP_194934 498 aa linear PLN 20-OCT-2022
DEFINITION calcium-binding EF hand family protein [Arabidopsis thaliana].
ACCESSION NP_194934
VERSION NP_194934.1
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
DBSOURCE REFSEQ: accession NM_119358.4
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (residues 1 to 498)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (residues 1 to 498)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (residues 1 to 498)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (residues 1 to 498)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
The reference sequence is identical to AEE85999.
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..498
/organism="Arabidopsis thaliana"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
Protein 1..498
/product="calcium-binding EF hand family protein"
/calculated_mol_wt=55284
Region 216..273
/region_name="EFh"
/note="EF-hand, calcium binding motif; A diverse
superfamily of calcium sensors and calcium signal
modulators; most examples in this alignment model have 2
active canonical EF hands. Ca2+ binding induces a
conformational change in the EF-hand motif, leading to...;
cd00051"
/db_xref="CDD:238008"
Site order(222,224,226,233,256,258,260,267)
/site_type="other"
/note="Ca2+ binding site [ion binding]"
/db_xref="CDD:238008"
Region 248..469
/region_name="EFh_MICU"
/note="EF-hand, calcium binding motif, found in
mitochondrial calcium uptake proteins MICU1, MICU2, MICU3,
and similar proteins; cd15900"
/db_xref="CDD:320080"
Region 248..276
/region_name="EF-hand motif"
/note="EF-hand motif [structural motif]"
/db_xref="CDD:320080"
Site order(256,258,260,267,450,452,454,461)
/site_type="other"
/note="Ca binding site [ion binding]"
/db_xref="CDD:320080"
Region 303..333
/region_name="EF-hand motif"
/note="EF-hand motif [structural motif]"
/db_xref="CDD:320080"
Region 328..464
/region_name="FRQ1"
/note="Ca2+-binding protein, EF-hand superfamily [Signal
transduction mechanisms]; COG5126"
/db_xref="CDD:444056"
Region 404..433
/region_name="EF-hand motif"
/note="EF-hand motif [structural motif]"
/db_xref="CDD:320080"
Region 441..469
/region_name="EF-hand motif"
/note="EF-hand motif [structural motif]"
/db_xref="CDD:320080"
CDS 1..498
/locus_tag="AT4G32060"
/gene_synonym="F10N7.140; F10N7_140"
/coded_by="NM_119358.4:209..1705"
/inference="Similar to RNA sequence,
EST:INSD:BP782250.1,INSD:ES063827.1,INSD:BP574023.1,
INSD:BP612372.1,INSD:ES160852.1,INSD:CB259250.1,
INSD:ES074644.1,INSD:BP610004.1,INSD:ES059924.1,
INSD:BX834472.1,INSD:BP812347.1,INSD:BP664373.1,
INSD:BP644446.1,INSD:BP665077.1,INSD:DR365173.1,
INSD:BP608889.1,INSD:DR365172.1,INSD:EG516296.1,
INSD:BP583531.1,INSD:EL167144.1,INSD:BP868389.1,
INSD:ES038763.1,INSD:ES102164.1,INSD:BP841746.1,
INSD:ES058713.1,INSD:BP634439.1,INSD:EL241378.1,
INSD:CD531188.1,INSD:BP651625.1,INSD:BP621655.1,
INSD:EL093923.1,INSD:BP813477.1,INSD:BP611950.1,
INSD:T21541.1,INSD:BP807730.1,INSD:EH865224.1,
INSD:ES101471.1,INSD:EL184335.1,INSD:EH807229.1,
INSD:CD530682.1,INSD:BP817195.1,INSD:ES013334.1,
INSD:R30357.1,INSD:EL024694.1,INSD:BP598804.1,
INSD:EL143862.1,INSD:AA728524.1,INSD:BP854639.1,
INSD:EL285860.1,INSD:AV548889.1,INSD:BP806106.1,
INSD:AA395624.1,INSD:BP661909.1,INSD:T04712.1,
INSD:ES077351.1,INSD:AV791399.1,INSD:BP666321.1,
INSD:ES056185.1,INSD:BE528765.1,INSD:BE530802.1,
INSD:AV831594.1,INSD:U74116.1,INSD:DR365171.1,
INSD:EL288639.1,INSD:BP862696.1,INSD:BX837479.1,
INSD:BP667490.1,INSD:EL967947.1,INSD:AV805000.1,
INSD:EL971662.1,INSD:BP624223.1,INSD:BP853509.1,
INSD:ES211128.1,INSD:EG492604.1,INSD:EH991802.1,
INSD:BP664189.1,INSD:EL033447.1,INSD:EH821989.1,
INSD:BP563613.1,INSD:BP805651.1,INSD:BP601704.1,
INSD:EL032904.1,INSD:EL123951.1,INSD:EL336837.1,
INSD:EH943784.1,INSD:ES003046.1,INSD:AA597536.1,
INSD:AV816891.1,INSD:BP577209.1,INSD:EL970530.1,
INSD:ES048863.1,INSD:BP868624.1,INSD:EL181345.1,
INSD:EL219906.1,INSD:BP609353.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BX827714.1,INSD:AY072163.1,INSD:AY122982.1,
INSD:BX828846.1"
/note="calcium-binding EF hand family protein; FUNCTIONS
IN: calcium ion binding; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 15 growth stages; CONTAINS
InterPro DOMAIN/s: EF-Hand 1, calcium-binding site
(InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249),
EF-hand-like domain (InterPro:IPR011992), Calcium-binding
EF-hand (InterPro:IPR002048), EF-hand
(InterPro:IPR018248); Has 1138 Blast hits to 1114 proteins
in 164 species: Archae - 0; Bacteria - 0; Metazoa - 850;
Fungi - 83; Plants - 103; Viruses - 0; Other Eukaryotes -
102 (source: NCBI BLink)."
/db_xref="GeneID:829337"
/db_xref="TAIR:AT4G32060"
/db_xref="Araport:AT4G32060"
ORIGIN
1 mpalshyrsv sslpsvdrsf lliqrlrihg ssssfpessp sasilsgadp lkctvsggsl
61 akwitgisag salgflywss gssdsisglf ggsnllsfad sstpsvcgvk vgdlkprsfi
121 pklslpgyss gfifgdayrr kiffnyekrl rlqsppekvf eyfasvrtdk geilmkpadl
181 mraivpvfpp seshlvregy ltgernpgel rcspseffml fdvdndglis fkeyiffvtl
241 lsipessfav afkmfdtdnn geidkeefkt vmslmrsqhr qgvghrdglr tglhmtgsve
301 dgglveyffg kdgsqklkhd kftkfmkdlt eemlrlefah ydykrrgsis akdfalsmva
361 aadashlskl ldrveslseh phlrdmrisl kefkqfdelr sklgpfslal faygkangll
421 tmkdfkraas qvcgitlsdn vieiafhvfd snqdgnlsvd eflrvlhrre rdvaqpiakg
481 lsryfsdgwk gskncsss
//