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Low temperature and salt responsive protein family [Arabidopsis thaliana]

NCBI Reference Sequence: NP_001154278.1

Identical Proteins FASTA Graphics 

LOCUS       NP_001154278              74 aa            linear   PLN 20-OCT-2022
DEFINITION  Low temperature and salt responsive protein family [Arabidopsis
            thaliana].
ACCESSION   NP_001154278
VERSION     NP_001154278.1
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
DBSOURCE    REFSEQ: accession NM_001160806.1
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (residues 1 to 74)
  AUTHORS   Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
            Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
            Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
            Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
            Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
            Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
            Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
            Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
            Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
            Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
            Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
            Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
            Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
            Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
            Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
            Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
            Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
            Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
            Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
            Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
            Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
            Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
            Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
            Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
            Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
            Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
            Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
            Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
            Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
            Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
            Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
            Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
            Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
            Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
            Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
            Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
            Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
            Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
            Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
            Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
            Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
            Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
            Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
            Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
            Martienssen,R. and McCombie,W.R.
  TITLE     Sequence and analysis of chromosome 4 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 402 (6763), 769-777 (1999)
   PUBMED   10617198
REFERENCE   2  (residues 1 to 74)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 74)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (residues 1 to 74)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            The reference sequence is identical to AEE85792.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..74
                     /organism="Arabidopsis thaliana"
                     /db_xref="taxon:3702"
                     /chromosome="4"
                     /ecotype="Columbia"
     Protein         1..74
                     /product="Low temperature and salt responsive protein
                     family"
                     /calculated_mol_wt=8388
     Region          8..56
                     /region_name="Pmp3"
                     /note="Proteolipid membrane potential modulator;
                     pfam01679"
                     /db_xref="CDD:460290"
     CDS             1..74
                     /locus_tag="AT4G30660"
                     /gene_synonym="T10C21.10; T10C21_10"
                     /coded_by="NM_001160806.1:92..316"
                     /inference="Similar to RNA sequence,
                     EST:INSD:EH965642.1,INSD:EL334774.1,INSD:DR350953.1,
                     INSD:EG488571.1,INSD:EL185435.1,INSD:DR350925.1,
                     INSD:ES058730.1,INSD:EL212979.1,INSD:ES081896.1,
                     INSD:EL249030.1,INSD:EL317536.1,INSD:EL120080.1,
                     INSD:DR350946.1,INSD:EL290713.1,INSD:ES191872.1,
                     INSD:EH922814.1,INSD:ES170167.1,INSD:DR350947.1,
                     INSD:EL222733.1,INSD:CB262082.1,INSD:EL099442.1,
                     INSD:EL012169.1,INSD:EL317390.1,INSD:EL110629.1,
                     INSD:ES108253.1,INSD:EL151374.1,INSD:EG488575.1,
                     INSD:DR350926.1"
                     /inference="Similar to RNA sequence, mRNA:INSD:BT029529.1"
                     /note="Low temperature and salt responsive protein family;
                     INVOLVED IN: response to cold, hyperosmotic salinity
                     response; LOCATED IN: endomembrane system, integral to
                     membrane; EXPRESSED IN: 22 plant structures; EXPRESSED
                     DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
                     Uncharacterised protein family UPF0057
                     (InterPro:IPR000612); BEST Arabidopsis thaliana protein
                     match is: Low temperature and salt responsive protein
                     family (TAIR:AT2G24040.1); Has 1255 Blast hits to 1255
                     proteins in 413 species: Archae - 0; Bacteria - 524;
                     Metazoa - 40; Fungi - 292; Plants - 377; Viruses - 0;
                     Other Eukaryotes - 22 (source: NCBI BLink)."
                     /db_xref="GeneID:829189"
                     /db_xref="TAIR:AT4G30660"
                     /db_xref="Araport:AT4G30660"
ORIGIN      
        1 mpsnceilce iiiaillppl gvcfrkgcct vefliclvlt ilgyvpgiiy aiyvivfqhr
       61 eeyfdeyrrp iysa
//
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Protein clusters for NP_001154278.1

Reference sequence information

  • RefSeq mRNA
    See reference mRNA sequence for the AT4G30660 gene (NM_001160806.1).
  • RefSeq protein isoforms
    See the other reference sequence protein isoform for the AT4G30660 gene (NP_194795.1).

More about the AT4G30660 gene

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