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PDZ and LIM domain protein 5 isoform X16 [Rattus norvegicus]

NCBI Reference Sequence: XP_006233481.1

Identical Proteins FASTA Graphics 

LOCUS       XP_006233481             482 aa            linear   ROD 22-FEB-2024
DEFINITION  PDZ and LIM domain protein 5 isoform X16 [Rattus norvegicus].
ACCESSION   XP_006233481
VERSION     XP_006233481.1
DBLINK      BioProject: PRJNA1074393
DBSOURCE    REFSEQ: accession XM_006233419.5
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086020) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..482
                     /organism="Rattus norvegicus"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     Protein         1..482
                     /product="PDZ and LIM domain protein 5 isoform X16"
                     /calculated_mol_wt=52237
     Region          5..83
                     /region_name="PDZ_PDLIM-like"
                     /note="PDZ domain of PDZ-LIM family proteins, and related
                     domains; cd06753"
                     /db_xref="CDD:467235"
     Site            order(13..19,31,34,63,67,70..71)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467235"
     Region          <83..>285
                     /region_name="PBP1"
                     /note="PAB1-binding protein, interacts with
                     poly(A)-binding protein [RNA processing and modification];
                     COG5180"
                     /db_xref="CDD:444064"
     Region          105..196
                     /region_name="DUF4749"
                     /note="Domain of unknown function (DUF4749); pfam15936"
                     /db_xref="CDD:464948"
     Region          306..357
                     /region_name="LIM1_ENH"
                     /note="The first LIM domain of the Enigma Homolog (ENH)
                     family; cd09453"
                     /db_xref="CDD:188837"
     Site            order(306,309,326,329,332,335,353,356)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188837"
     Region          365..416
                     /region_name="LIM"
                     /note="LIM is a small protein-protein interaction domain,
                     containing two zinc fingers; cl02475"
                     /db_xref="CDD:413332"
     Site            order(365,368,385,388,391,394,412,415)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:259829"
     Region          424..478
                     /region_name="LIM"
                     /note="LIM is a small protein-protein interaction domain,
                     containing two zinc fingers; cl02475"
                     /db_xref="CDD:413332"
     Site            order(424,427,446,449,452,455,473,476)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:259829"
     CDS             1..482
                     /gene="Pdlim5"
                     /gene_synonym="Enh; Enh1"
                     /coded_by="XM_006233419.5:165..1613"
                     /db_xref="GeneID:64353"
                     /db_xref="RGD:621076"
ORIGIN      
        1 msnynvslvg papwgfrlqg gkdfnmplti sslkdggkas qahvrigdvv lsidgisaqg
       61 mthleaqnki kactgslnmt lqrasaaaks epvavqkptv tsvcsesaqe laegqrrgsq
      121 gdikqqngpp rkhivernte fyhipthsda skkrliedte dwrprtgttq srsfrilaqi
      181 tgtehlkese ndnakkanst pepsqqsasp lsaaeslesp gsnrpvvagl rsaaafkpvg
      241 stsvkspswq rpnqaapstg risnsasssg tgapmkpavg ppqpsdqdtl vqraehipag
      301 krtpmcahcn qairgpflva lgkswhpeef ncahckntma yigfveekga lycelcyekf
      361 fapecgrcqr kilgevinal kqtwhvscfv cvacgkpirn nvfhledgep ycetdyyalf
      421 gticrgcefp ieagdmflea lgstwhdtcf vcsvccesle gqtffskkdk plckkhahsv
      481 nf
//
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