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NCBI Reference Sequence: XP_006233481.1
Identical Proteins FASTA Graphics
LOCUS XP_006233481 482 aa linear ROD 22-FEB-2024 DEFINITION PDZ and LIM domain protein 5 isoform X16 [Rattus norvegicus]. ACCESSION XP_006233481 VERSION XP_006233481.1 DBLINK BioProject: PRJNA1074393 DBSOURCE REFSEQ: accession XM_006233419.5 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_086020) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_036323735.1-RS_2024_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/09/2024 ##Genome-Annotation-Data-END## COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..482 /organism="Rattus norvegicus" /strain="BN/NHsdMcwi" /bio_material="RGD 61498" /db_xref="taxon:10116" /chromosome="2" /sex="male" /tissue_type="kidney, spleen, liver" /geo_loc_name="USA: Wisconsin, Milwaukee" /lat_lon="43.05 N 88.04 W" /collected_by="Rebecca Schilling, Melinda Dwinell" Protein 1..482 /product="PDZ and LIM domain protein 5 isoform X16" /calculated_mol_wt=52237 Region 5..83 /region_name="PDZ_PDLIM-like" /note="PDZ domain of PDZ-LIM family proteins, and related domains; cd06753" /db_xref="CDD:467235" Site order(13..19,31,34,63,67,70..71) /site_type="other" /note="peptide binding site [polypeptide binding]" /db_xref="CDD:467235" Region <83..>285 /region_name="PBP1" /note="PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification]; COG5180" /db_xref="CDD:444064" Region 105..196 /region_name="DUF4749" /note="Domain of unknown function (DUF4749); pfam15936" /db_xref="CDD:464948" Region 306..357 /region_name="LIM1_ENH" /note="The first LIM domain of the Enigma Homolog (ENH) family; cd09453" /db_xref="CDD:188837" Site order(306,309,326,329,332,335,353,356) /site_type="other" /note="Zn binding site [ion binding]" /db_xref="CDD:188837" Region 365..416 /region_name="LIM" /note="LIM is a small protein-protein interaction domain, containing two zinc fingers; cl02475" /db_xref="CDD:413332" Site order(365,368,385,388,391,394,412,415) /site_type="other" /note="Zn binding site [ion binding]" /db_xref="CDD:259829" Region 424..478 /region_name="LIM" /note="LIM is a small protein-protein interaction domain, containing two zinc fingers; cl02475" /db_xref="CDD:413332" Site order(424,427,446,449,452,455,473,476) /site_type="other" /note="Zn binding site [ion binding]" /db_xref="CDD:259829" CDS 1..482 /gene="Pdlim5" /gene_synonym="Enh; Enh1" /coded_by="XM_006233419.5:165..1613" /db_xref="GeneID:64353" /db_xref="RGD:621076" ORIGIN 1 msnynvslvg papwgfrlqg gkdfnmplti sslkdggkas qahvrigdvv lsidgisaqg 61 mthleaqnki kactgslnmt lqrasaaaks epvavqkptv tsvcsesaqe laegqrrgsq 121 gdikqqngpp rkhivernte fyhipthsda skkrliedte dwrprtgttq srsfrilaqi 181 tgtehlkese ndnakkanst pepsqqsasp lsaaeslesp gsnrpvvagl rsaaafkpvg 241 stsvkspswq rpnqaapstg risnsasssg tgapmkpavg ppqpsdqdtl vqraehipag 301 krtpmcahcn qairgpflva lgkswhpeef ncahckntma yigfveekga lycelcyekf 361 fapecgrcqr kilgevinal kqtwhvscfv cvacgkpirn nvfhledgep ycetdyyalf 421 gticrgcefp ieagdmflea lgstwhdtcf vcsvccesle gqtffskkdk plckkhahsv 481 nf //
Whole sequence Selected region from: to:
Conserved Domains
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