LOCUS YP_206945 216 aa linear CON 03-AUG-2016
DEFINITION keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
[Aliivibrio fischeri ES114].
ACCESSION YP_206945
VERSION YP_206945.1
DBLINK BioProject: PRJNA58163
Assembly: GCF_000011805.1
DBSOURCE REFSEQ: accession NC_006841.2
KEYWORDS RefSeq.
SOURCE Aliivibrio fischeri ES114
ORGANISM Aliivibrio fischeri ES114
Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales;
Vibrionaceae; Aliivibrio.
REFERENCE 1 (residues 1 to 216)
AUTHORS Mandel,M.J., Stabb,E.V. and Ruby,E.G.
TITLE Comparative genomics-based investigation of resequencing targets in
Vibrio fischeri: focus on point miscalls and artefactual expansions
JOURNAL BMC Genomics 9, 138 (2008)
PUBMED 18366731
REMARK Publication Status: Online-Only
REFERENCE 2 (residues 1 to 216)
AUTHORS Ruby,E.G., Urbanowski,M., Campbell,J., Dunn,A., Faini,M.,
Gunsalus,R., Lostroh,P., Lupp,C., McCann,J., Millikan,D.,
Schaefer,A., Stabb,E., Stevens,A., Visick,K., Whistler,C. and
Greenberg,E.P.
TITLE Complete genome sequence of Vibrio fischeri: a symbiotic bacterium
with pathogenic congeners
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 102 (8), 3004-3009 (2005)
PUBMED 15703294
REFERENCE 3 (residues 1 to 216)
AUTHORS Mandel,M.J., Stabb,E.V. and Ruby,E.G.
TITLE Direct Submission
JOURNAL Submitted (02-OCT-2007) Department of Medical Microbiology and
Immunology, University of Wisconsin School of Medicine and Public
Health, 1550 Linden Drive, Madison, WI 53706-1521, USA
REMARK Sequence update by submitter
REFERENCE 4 (residues 1 to 216)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (14-FEB-2005) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 5 (residues 1 to 216)
AUTHORS Ruby,E.G., Urbanowski,M., Campbell,J.W., Dunn,A., Faini,M.A.,
Gunsalus,R.P., Lostroh,P., Lupp,C., McCann,J.R., Millikan,D.S.,
Schaefer,A.L., Stabb,E.V., Stevens,A.M., Visick,K.L., Whistler,C.A.
and Greenberg,E.P.
TITLE Direct Submission
JOURNAL Submitted (16-SEP-2004) Kewalo Marine Laboratory, and W.M. Keck
Microbial Communities and Cell Signaling Program, University of
Hawaii, Honolulu, HI 96081, USA
COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The
reference sequence was derived from AAW88057.
RefSeq Category: Reference Genome
CLI: Clinical Isolate
FGS: First Genome sequenced
UPR: UniProt Genome
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..216
/organism="Aliivibrio fischeri ES114"
/strain="ES114"
/db_xref="taxon:312309"
/chromosome="II"
Protein 1..216
/product="keto-hydroxyglutarate-aldolase/keto-deoxy-
phosphogluconate aldolase"
/EC_number="4.1.2.14"
/EC_number="4.1.3.16"
/calculated_mol_wt=23140
Region 1..209
/region_name="PRK05718"
/note="keto-hydroxyglutarate-aldolase/keto-deoxy-
phosphogluconate aldolase; Provisional"
/db_xref="CDD:235577"
Site order(18,43,47,71,131,133,159)
/site_type="active"
/db_xref="CDD:188632"
Site order(47,71,73,92..95,115..118,120,124,133..134,146,
150..151)
/site_type="other"
/note="intersubunit interface [polypeptide binding]"
/db_xref="CDD:188632"
Site 131
/site_type="active"
/note="catalytic residue [active]"
/db_xref="CDD:188632"
CDS 1..216
/locus_tag="VF_A0987"
/old_locus_tag="VFA0987"
/coded_by="complement(NC_006841.2:1106806..1107456)"
/note="catalyzes the formation of pyruvate and glyoxylate
from 4-hydroxy-2-oxoglutarate; or pyruvate and
D-glyceraldehyde 3-phosphate from
2-dehydro-3-deoxy-D-glyconate 6-phosphate"
/transl_table=11
/db_xref="GeneID:3280876"
CONTIG join(WP_011263803.1:1..216)
ORIGIN
1 mknnlwietl ralrvmpviq ienaedavpl akalvenglp aaeitfrtea aeesirrirq
61 aypdivlcag tvltkeqaql ateagadfvv spgfnpntvq ycldndikii pgvnnpslve
121 qalemglsal kffpaeasgg lnmlksltgp ygniqlmptg gvnpnnllsy laipqviacg
181 gtwiapteai rnhdwdiiak nvretcslvv gnddgk
//