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RE62842p [Drosophila melanogaster]

GenBank: AAL49183.1

Identical Proteins FASTA Graphics 

LOCUS       AAL49183                 139 aa            linear   INV 20-DEC-2001
DEFINITION  RE62842p [Drosophila melanogaster].
ACCESSION   AAL49183
VERSION     AAL49183.1
DBSOURCE    accession AY071561.1
KEYWORDS    .
SOURCE      Drosophila melanogaster (fruit fly)
  ORGANISM  Drosophila melanogaster
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
REFERENCE   1  (residues 1 to 139)
  AUTHORS   Stapleton,M., Brokstein,P., Hong,L., Agbayani,A., Carlson,J.,
            Champe,M., Chavez,C., Dorsett,V., Dresnek,D., Farfan,D., Frise,E.,
            George,R., Gonzalez,M., Guarin,H., Kronmiller,B., Li,P., Liao,G.,
            Miranda,A., Mungall,C.J., Nunoo,J., Pacleb,J., Paragas,V., Park,S.,
            Patel,S., Phouanenavong,S., Wan,K., Yu,C., Lewis,S.E., Rubin,G.M.
            and Celniker,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2001) Berkeley Drosophila Genome Project,
            Lawrence Berkeley National Laboratory, One Cyclotron Road,
            Berkeley, CA 94720, USA
COMMENT     Sequence submitted by:
            Berkeley Drosophila Genome Project
            Lawrence Berkeley National Laboratory
            Berkeley, CA 94720
            This clone was sequenced as part of a high-throughput process to
            sequence clones from Drosophila Gene Collection 1 (Rubin et al.,
            Science 2000). The sequence has been subjected to integrity checks
            for sequence accuracy, presence of a polyA tail and contiguity
            within 100 kb in the genome. Thus we believe the sequence to
            reflect accurately this particular cDNA clone.  However, there are
            artifacts associated with the generation of cDNA clones that may
            have not been detected in our initial analyses such as internal
            priming, priming from contaminating genomic DNA, retained introns
            due to reverse transcription of unspliced precursor RNAs, and
            reverse transcriptase errors that result in single base changes.
            For further information about this sequence, including its location
            and relationship to other sequences, please visit our Web site
            (http://fruitfly.berkeley.edu) or send email to
            cdna@fruitfly.berkeley.edu.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..139
                     /organism="Drosophila melanogaster"
                     /strain="y; cn bw sp"
                     /db_xref="taxon:7227"
     Protein         1..139
                     /product="RE62842p"
     Region          3..137
                     /region_name="TRAPPC2_sedlin"
                     /note="Trafficking protein particle complex subunit 2;
                     cd14825"
                     /db_xref="CDD:341429"
     Site            order(52..53,75..77,79,102,106,110)
                     /site_type="other"
                     /note="TRAPPC5 interface [polypeptide binding]"
                     /db_xref="CDD:341429"
     Site            order(107,110..113)
                     /site_type="other"
                     /note="TRAPPC3 interface [polypeptide binding]"
                     /db_xref="CDD:341429"
     CDS             1..139
                     /coded_by="AY071561.1:22..441"
                     /note="Longest ORF"
ORIGIN      
        1 mstyyfvivg qndnpiyeke fstvnkelrk edhrhltqfi ahaaldlvde hkwktanmql
       61 ksidrfnqwf vsafitasqi rfiivhdnkn degiknffne mydtyiknsm nafyrintpi
      121 kspmfekkse ifgrkylls
//
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Protein 3D Structure

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Reference sequence information

  • RefSeq protein
    See the reference protein sequence for TRAPP subunit 20 (NP_648841.1).

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