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cold shock domain protein 3 [Arabidopsis thaliana]

GenBank: AEC06697.1

Identical Proteins FASTA Graphics 

LOCUS       AEC06697                 301 aa            linear   PLN 23-MAR-2023
DEFINITION  cold shock domain protein 3 [Arabidopsis thaliana].
ACCESSION   AEC06697
VERSION     AEC06697.1
DBLINK      BioProject: PRJNA10719
            BioSample: SAMN03081427
DBSOURCE    accession CP002685.1
KEYWORDS    .
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (residues 1 to 301)
  AUTHORS   Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
            Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
            Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
            Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
            Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
            Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
            Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
            Venter,J.C.
  TITLE     Sequence and analysis of chromosome 2 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 402 (6763), 761-768 (1999)
   PUBMED   10617197
REFERENCE   2  (residues 1 to 301)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE   3  (residues 1 to 301)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
COMMENT     Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..301
                     /organism="Arabidopsis thaliana"
                     /db_xref="taxon:3702"
                     /chromosome="2"
                     /ecotype="Columbia"
     Protein         1..301
                     /product="cold shock domain protein 3"
     Region          13..77
                     /region_name="CSD"
                     /note="'Cold-shock' DNA-binding domain; pfam00313"
                     /db_xref="CDD:278729"
     Site            order(17,26,37,67)
                     /site_type="DNA binding"
                     /note="DNA-binding site [nucleotide binding]"
                     /db_xref="CDD:239905"
     Site            order(23..29,36..39)
                     /site_type="active"
                     /note="RNA-binding motif [active]"
                     /db_xref="CDD:239905"
     Region          132..299
                     /region_name="PTZ00368"
                     /note="universal minicircle sequence binding protein
                     (UMSBP); Provisional"
                     /db_xref="CDD:173561"
     CDS             1..301
                     /gene="CSP3"
                     /locus_tag="AT2G17870"
                     /gene_synonym="ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3"
                     /gene_synonym="ATCSP3"
                     /gene_synonym="cold shock domain protein 3"
                     /gene_synonym="T13L16.11"
                     /gene_synonym="T13L16_11"
                     /coded_by="complement(CP002685.1:7764276..7765181)"
                     /inference="Similar to RNA sequence,
                     EST:INSD:DR750983.1,INSD:ES165705.1,INSD:BP615148.1,
                     INSD:ES073636.1,INSD:EL241702.1,INSD:BP591011.1,
                     INSD:BP601047.1,INSD:BP592949.1,INSD:EH831350.1,
                     INSD:BP608494.1,INSD:DR273077.1,INSD:DR273079.1,
                     INSD:EH993415.1,INSD:EL240943.1,INSD:DR373849.1,
                     INSD:ES195579.1,INSD:DR750711.1,INSD:DR273081.1,
                     INSD:ES198978.1,INSD:ES196638.1,INSD:EL186871.1,
                     INSD:DR273075.1,INSD:DR232237.1,INSD:DR273083.1,
                     INSD:DR273082.1,INSD:EL160353.1,INSD:BP643523.1,
                     INSD:DR273080.1,INSD:EL155704.1,INSD:T76328.1,
                     INSD:DR273078.1,INSD:EG525050.1,INSD:BE844786.1,
                     INSD:BP822959.1,INSD:EL991763.1,INSD:EG513878.1,
                     INSD:CB264685.1,INSD:ES118636.1,INSD:EL339480.1,
                     INSD:AI995722.1,INSD:EH940424.1,INSD:EG513823.1,
                     INSD:EL280450.1,INSD:EG525051.1,INSD:BP606856.1,
                     INSD:AV822566.1,INSD:EL982226.1,INSD:EL103107.1,
                     INSD:DR273076.1,INSD:AV787502.1,INSD:EL006667.1,
                     INSD:EH845087.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:AY062985.1,INSD:AY035133.1,INSD:AB308041.1"
                     /note="cold shock domain protein 3 (CSP3); FUNCTIONS IN:
                     DNA binding, zinc ion binding, nucleic acid binding;
                     INVOLVED IN: response to cold, DNA duplex unwinding;
                     LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 26 plant
                     structures; EXPRESSED DURING: 14 growth stages; CONTAINS
                     InterPro DOMAIN/s: Nucleic acid-binding, OB-fold
                     (InterPro:IPR012340), Cold-shock conserved site
                     (InterPro:IPR019844), Zinc finger, CCHC retroviral-type
                     (InterPro:IPR013084), Cold shock protein
                     (InterPro:IPR011129), Nucleic acid-binding, OB-fold-like
                     (InterPro:IPR016027), Zinc finger, CCHC-type
                     (InterPro:IPR001878), Cold-shock protein, DNA-binding
                     (InterPro:IPR002059); BEST Arabidopsis thaliana protein
                     match is: cold shock domain protein 1 (TAIR:AT4G36020.1);
                     Has 72472 Blast hits to 41123 proteins in 2889 species:
                     Archae - 51; Bacteria - 27281; Metazoa - 11105; Fungi -
                     2852; Plants - 6181; Viruses - 14957; Other Eukaryotes -
                     10045 (source: NCBI BLink)."
                     /db_xref="Araport:AT2G17870"
                     /db_xref="TAIR:AT2G17870"
ORIGIN      
        1 mamedqsaar sigkvswfsd gkgygfitpd dggeelfvhq ssivsdgfrs ltlgesveye
       61 ialgsdgktk aievtapggg slnkkenssr gsggncfncg evghmakdcd ggsggksfgg
      121 gggrrsggeg ecymcgdvgh fardcrqsgg gnsggggggg rpcyscgevg hlakdcrggs
      181 ggnryggggg rgsggdgcym cggvghfard crqngggnvg gggstcytcg gvghiakvct
      241 skipsggggg gracyecggt ghlardcdrr gsgssggggg snkcficgke ghfarectsv
      301 a
//
Feature
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Reference sequence information

  • RefSeq protein
    See the reference protein sequence for cold shock domain protein 3 (NP_565427.1).

More about the CSP3 gene

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