LOCUS AEC06697 301 aa linear PLN 23-MAR-2023
DEFINITION cold shock domain protein 3 [Arabidopsis thaliana].
ACCESSION AEC06697
VERSION AEC06697.1
DBLINK BioProject: PRJNA10719
BioSample: SAMN03081427
DBSOURCE accession CP002685.1
KEYWORDS .
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (residues 1 to 301)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (residues 1 to 301)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (residues 1 to 301)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
COMMENT Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..301
/organism="Arabidopsis thaliana"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
Protein 1..301
/product="cold shock domain protein 3"
Region 13..77
/region_name="CSD"
/note="'Cold-shock' DNA-binding domain; pfam00313"
/db_xref="CDD:278729"
Site order(17,26,37,67)
/site_type="DNA binding"
/note="DNA-binding site [nucleotide binding]"
/db_xref="CDD:239905"
Site order(23..29,36..39)
/site_type="active"
/note="RNA-binding motif [active]"
/db_xref="CDD:239905"
Region 132..299
/region_name="PTZ00368"
/note="universal minicircle sequence binding protein
(UMSBP); Provisional"
/db_xref="CDD:173561"
CDS 1..301
/gene="CSP3"
/locus_tag="AT2G17870"
/gene_synonym="ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3"
/gene_synonym="ATCSP3"
/gene_synonym="cold shock domain protein 3"
/gene_synonym="T13L16.11"
/gene_synonym="T13L16_11"
/coded_by="complement(CP002685.1:7764276..7765181)"
/inference="Similar to RNA sequence,
EST:INSD:DR750983.1,INSD:ES165705.1,INSD:BP615148.1,
INSD:ES073636.1,INSD:EL241702.1,INSD:BP591011.1,
INSD:BP601047.1,INSD:BP592949.1,INSD:EH831350.1,
INSD:BP608494.1,INSD:DR273077.1,INSD:DR273079.1,
INSD:EH993415.1,INSD:EL240943.1,INSD:DR373849.1,
INSD:ES195579.1,INSD:DR750711.1,INSD:DR273081.1,
INSD:ES198978.1,INSD:ES196638.1,INSD:EL186871.1,
INSD:DR273075.1,INSD:DR232237.1,INSD:DR273083.1,
INSD:DR273082.1,INSD:EL160353.1,INSD:BP643523.1,
INSD:DR273080.1,INSD:EL155704.1,INSD:T76328.1,
INSD:DR273078.1,INSD:EG525050.1,INSD:BE844786.1,
INSD:BP822959.1,INSD:EL991763.1,INSD:EG513878.1,
INSD:CB264685.1,INSD:ES118636.1,INSD:EL339480.1,
INSD:AI995722.1,INSD:EH940424.1,INSD:EG513823.1,
INSD:EL280450.1,INSD:EG525051.1,INSD:BP606856.1,
INSD:AV822566.1,INSD:EL982226.1,INSD:EL103107.1,
INSD:DR273076.1,INSD:AV787502.1,INSD:EL006667.1,
INSD:EH845087.1"
/inference="similar to RNA sequence,
mRNA:INSD:AY062985.1,INSD:AY035133.1,INSD:AB308041.1"
/note="cold shock domain protein 3 (CSP3); FUNCTIONS IN:
DNA binding, zinc ion binding, nucleic acid binding;
INVOLVED IN: response to cold, DNA duplex unwinding;
LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 26 plant
structures; EXPRESSED DURING: 14 growth stages; CONTAINS
InterPro DOMAIN/s: Nucleic acid-binding, OB-fold
(InterPro:IPR012340), Cold-shock conserved site
(InterPro:IPR019844), Zinc finger, CCHC retroviral-type
(InterPro:IPR013084), Cold shock protein
(InterPro:IPR011129), Nucleic acid-binding, OB-fold-like
(InterPro:IPR016027), Zinc finger, CCHC-type
(InterPro:IPR001878), Cold-shock protein, DNA-binding
(InterPro:IPR002059); BEST Arabidopsis thaliana protein
match is: cold shock domain protein 1 (TAIR:AT4G36020.1);
Has 72472 Blast hits to 41123 proteins in 2889 species:
Archae - 51; Bacteria - 27281; Metazoa - 11105; Fungi -
2852; Plants - 6181; Viruses - 14957; Other Eukaryotes -
10045 (source: NCBI BLink)."
/db_xref="Araport:AT2G17870"
/db_xref="TAIR:AT2G17870"
ORIGIN
1 mamedqsaar sigkvswfsd gkgygfitpd dggeelfvhq ssivsdgfrs ltlgesveye
61 ialgsdgktk aievtapggg slnkkenssr gsggncfncg evghmakdcd ggsggksfgg
121 gggrrsggeg ecymcgdvgh fardcrqsgg gnsggggggg rpcyscgevg hlakdcrggs
181 ggnryggggg rgsggdgcym cggvghfard crqngggnvg gggstcytcg gvghiakvct
241 skipsggggg gracyecggt ghlardcdrr gsgssggggg snkcficgke ghfarectsv
301 a
//