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GenBank: APW95832.1
Identical Proteins FASTA Graphics
LOCUS APW95832 359 aa linear BCT 22-AUG-2019 DEFINITION cysteine protease StiP family protein (plasmid) [Escherichia coli]. ACCESSION APW95832 VERSION APW95832.1 DBLINK BioProject: PRJNA418674 BioSample: SAMN06197014 DBSOURCE accession CP019214.3 KEYWORDS . SOURCE Escherichia coli ORGANISM Escherichia coli Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia. REFERENCE 1 (residues 1 to 359) AUTHORS Zhao,F., Feng,Y. and Zong,Z. TITLE Characterization of Escherichia coli WCHEC050613 by whole genome sequencing JOURNAL Unpublished REFERENCE 2 (residues 1 to 359) AUTHORS Zhao,F., Feng,Y. and Zong,Z. TITLE Direct Submission JOURNAL Submitted (17-JAN-2017) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China REFERENCE 3 (residues 1 to 359) AUTHORS Zhao,F., Feng,Y. and Zong,Z. TITLE Direct Submission JOURNAL Submitted (04-APR-2018) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 359) AUTHORS Zhao,F., Feng,Y. and Zong,Z. TITLE Direct Submission JOURNAL Submitted (21-AUG-2019) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China REMARK Sequence update by submitter COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 08/21/2019 16:16:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 5,064 CDSs (total) :: 4,944 Genes (coding) :: 4,661 CDSs (with protein) :: 4,661 Genes (RNA) :: 120 rRNAs :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs :: 8, 7, 7 (5S, 16S, 23S) tRNAs :: 87 ncRNAs :: 11 Pseudo Genes (total) :: 283 CDSs (without protein) :: 283 Pseudo Genes (ambiguous residues) :: 0 of 283 Pseudo Genes (frameshifted) :: 118 of 283 Pseudo Genes (incomplete) :: 151 of 283 Pseudo Genes (internal stop) :: 43 of 283 Pseudo Genes (multiple problems) :: 26 of 283 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..359 /organism="Escherichia coli" /strain="WCHEC050613" /isolation_source="Sewage" /db_xref="taxon:562" /plasmid="pMCR_WCHEC050613" /geo_loc_name="China: Sichuan, Chengdu" /collection_date="2015-11" Protein 1..359 /product="cysteine protease StiP family protein" Region 9..249 /region_name="StiP-like" /note="tellurite-like stress resistance cysteine protease StiP and similar proteins; pfam11202" /db_xref="CDD:431723" Region 277..357 /region_name="PELOTA_1" /note="PELOTA RNA binding domain; pfam15608" /db_xref="CDD:434808" CDS 1..359 /locus_tag="DBA32_24510" /old_locus_tag="BVJ48_25425" /coded_by="complement(CP019214.3:76235..77314)" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_309373.2" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 ORIGIN 1 mqphdtftgs yqpgdvefll kpvviemtpv eqkeeliqsg kkhysdmlsq epaptqwhld 61 lfhraldrga erlakevtql aialakrfgd epivlaslvr agvplgvmlh qalrdmgkts 121 whygisiird rgidgaaldv ieerhgtsgi vfvdgwtgkg aitgelvral kdrpgypeqp 181 rlvvladpcg cswlaasddd wlipfgimga pvsglisrsv wsseglhgcm vcehlsefec 241 srmlvdtvah frkkltpssl aplswntesa rvlwqtsrdv iafladefkv dsvnrikpgi 301 aeatravlrr vpdhvfvrsi ddsdvallvg larekgivvt emggtlgqyr avtiikkvl //
Whole sequence Selected region from: to:
Conserved Domains
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