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cysteine protease StiP family protein (plasmid) [Escherichia coli]

GenBank: APW95832.1

Identical Proteins FASTA Graphics 

LOCUS       APW95832                 359 aa            linear   BCT 22-AUG-2019
DEFINITION  cysteine protease StiP family protein (plasmid) [Escherichia coli].
ACCESSION   APW95832
VERSION     APW95832.1
DBLINK      BioProject: PRJNA418674
            BioSample: SAMN06197014
DBSOURCE    accession CP019214.3
KEYWORDS    .
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Escherichia.
REFERENCE   1  (residues 1 to 359)
  AUTHORS   Zhao,F., Feng,Y. and Zong,Z.
  TITLE     Characterization of Escherichia coli WCHEC050613 by whole genome
            sequencing
  JOURNAL   Unpublished
REFERENCE   2  (residues 1 to 359)
  AUTHORS   Zhao,F., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-JAN-2017) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
REFERENCE   3  (residues 1 to 359)
  AUTHORS   Zhao,F., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
  REMARK    Sequence update by submitter
REFERENCE   4  (residues 1 to 359)
  AUTHORS   Zhao,F., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-AUG-2019) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
  REMARK    Sequence update by submitter
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 08/21/2019 16:16:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 5,064
            CDSs (total)                      :: 4,944
            Genes (coding)                    :: 4,661
            CDSs (with protein)               :: 4,661
            Genes (RNA)                       :: 120
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 283
            CDSs (without protein)            :: 283
            Pseudo Genes (ambiguous residues) :: 0 of 283
            Pseudo Genes (frameshifted)       :: 118 of 283
            Pseudo Genes (incomplete)         :: 151 of 283
            Pseudo Genes (internal stop)      :: 43 of 283
            Pseudo Genes (multiple problems)  :: 26 of 283
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..359
                     /organism="Escherichia coli"
                     /strain="WCHEC050613"
                     /isolation_source="Sewage"
                     /db_xref="taxon:562"
                     /plasmid="pMCR_WCHEC050613"
                     /geo_loc_name="China: Sichuan, Chengdu"
                     /collection_date="2015-11"
     Protein         1..359
                     /product="cysteine protease StiP family protein"
     Region          9..249
                     /region_name="StiP-like"
                     /note="tellurite-like stress resistance cysteine protease
                     StiP and similar proteins; pfam11202"
                     /db_xref="CDD:431723"
     Region          277..357
                     /region_name="PELOTA_1"
                     /note="PELOTA RNA binding domain; pfam15608"
                     /db_xref="CDD:434808"
     CDS             1..359
                     /locus_tag="DBA32_24510"
                     /old_locus_tag="BVJ48_25425"
                     /coded_by="complement(CP019214.3:76235..77314)"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309373.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
ORIGIN      
        1 mqphdtftgs yqpgdvefll kpvviemtpv eqkeeliqsg kkhysdmlsq epaptqwhld
       61 lfhraldrga erlakevtql aialakrfgd epivlaslvr agvplgvmlh qalrdmgkts
      121 whygisiird rgidgaaldv ieerhgtsgi vfvdgwtgkg aitgelvral kdrpgypeqp
      181 rlvvladpcg cswlaasddd wlipfgimga pvsglisrsv wsseglhgcm vcehlsefec
      241 srmlvdtvah frkkltpssl aplswntesa rvlwqtsrdv iafladefkv dsvnrikpgi
      301 aeatravlrr vpdhvfvrsi ddsdvallvg larekgivvt emggtlgqyr avtiikkvl
//
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