LOCUS BAB34159 218 aa linear BCT 12-JUN-2024
DEFINITION allophanate hydrolase [Escherichia coli O157:H7 str. Sakai].
ACCESSION BAB34159
VERSION BAB34159.1
DBLINK BioProject: PRJNA226
BioSample: SAMN01911278
DBSOURCE accession BA000007.3
KEYWORDS .
SOURCE Escherichia coli O157:H7 str. Sakai
ORGANISM Escherichia coli O157:H7 str. Sakai
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
Enterobacterales; Enterobacteriaceae; Escherichia.
REFERENCE 1
AUTHORS Makino,K., Yokoyama,K., Kubota,Y., Yutsudo,C.H., Kimura,S.,
Kurokawa,K., Ishii,K., Hattori,M., Tatsuno,I., Abe,H., Iida,T.,
Yamamoto,K., Onishi,M., Hayashi,T., Yasunaga,T., Honda,T.,
Sasakawa,C. and Shinagawa,H.
TITLE Complete nucleotide sequence of the prophage VT2-Sakai carrying the
verotoxin 2 genes of the enterohemorrhagic Escherichia coli O157:H7
derived from the Sakai outbreak
JOURNAL Genes Genet Syst 74 (5), 227-239 (1999)
PUBMED 10734605
REFERENCE 2
AUTHORS Ohnishi,M., Murata,T., Nakayama,K., Kuhara,S., Hattori,M.,
Kurokawa,K., Yasunaga,T., Yokoyama,K., Makino,K., Shinagawa,H. and
Hayashi,T.
TITLE Comparative analysis of the whole set of rRNA operons between an
enterohemorrhagic Escherichia coli O157:H7 Sakai strain and an
Escherichia coli K-12 strain MG1655
JOURNAL Syst Appl Microbiol 23 (3), 315-324 (2000)
PUBMED 11108008
REFERENCE 3
AUTHORS Yokoyama,K., Makino,K., Kubota,Y., Watanabe,M., Kimura,S.,
Yutsudo,C.H., Kurokawa,K., Ishii,K., Hattori,M., Tatsuno,I.,
Abe,H., Yoh,M., Iida,T., Ohnishi,M., Hayashi,T., Yasunaga,T.,
Honda,T., Sasakawa,C. and Shinagawa,H.
TITLE Complete nucleotide sequence of the prophage VT1-Sakai carrying the
Shiga toxin 1 genes of the enterohemorrhagic Escherichia coli
O157:H7 strain derived from the Sakai outbreak
JOURNAL Gene 258 (1-2), 127-139 (2000)
PUBMED 11111050
REFERENCE 4
AUTHORS Hayashi,T., Makino,K., Ohnishi,M., Kurokawa,K., Ishii,K.,
Yokoyama,K., Han,C.G., Ohtsubo,E., Nakayama,K., Murata,T.,
Tanaka,M., Tobe,T., Iida,T., Takami,H., Honda,T., Sasakawa,C.,
Ogasawara,N., Yasunaga,T., Kuhara,S., Shiba,T., Hattori,M. and
Shinagawa,H.
TITLE Complete genome sequence of enterohemorrhagic Escherichia coli
O157:H7 and genomic comparison with a laboratory strain K-12
JOURNAL DNA Res 8 (1), 11-22 (2001)
PUBMED 11258796
REMARK Erratum:[DNA Res 2001 Apr 27;8(2):96]
REFERENCE 5 (residues 1 to 218)
AUTHORS Ogura,Y., Kurokawa,K., Hayashi,T. and Hattori,M.
TITLE Direct Submission
JOURNAL Submitted (26-JUN-2000) Contact:Yoshitoshi Ogura Kyushu University;
31-1 Maidashi Higashi-ku, Fukuoka, Fukuoka 812-8582, Japan
COMMENT On May 10, 2018 this sequence version replased gi: 47118301
This update is obtained as follows: the Sakai genome was
resequenced by illumina MiSeq and PacBio RS II sequencers and 78
sites of single base error, 11 sites of insertion (10 one-base
insertions and a 141-base insertion) and 16 sites of deletion (14
one-base deletions, a three-base deletion and a six-base deletion)
were corrected. Annotation was performed using DFAST
auto-annotation system with manual curation.
This work was done in collaboration with Tetsuya Hayashi, Makoto
Ohnishi, Keisuke Nakayama (Miyazaki Medical College), Kozo Makino,
Ken Kurokawa, Katsushi Yokoyama, Masashi Tanaka, Takeshi Honda,
Teruo Yasunaga, Hideo Shinagawa (Osaka University), Takahiro Murata
(Shinshu University), Chang-Gyun Han, Eiichi Ohtsubo, Toru Tobe,
Chihiro Sasakawa (University of Tokyo), Hideto Takami (Japan Marine
Science and Technology Center), Naotake Ogasawara (Nara Institute
of Science and Technology), Satoru Kuhara (Kuyshu University), and
supported by the Research for the Future Program of the Japan
Society for the Promotion of Science.
FEATURES Location/Qualifiers
source 1..218
/organism="Escherichia coli O157:H7 str. Sakai"
/strain="Sakai"
/sub_strain="RIMD 0509952"
/serovar="O157:H7"
/db_xref="taxon:386585"
Protein 1..218
/product="allophanate hydrolase"
Region 9..211
/region_name="TIGR00370"
/note="sensor histidine kinase inhibitor, KipI family"
/db_xref="CDD:129467"
CDS 1..218
/gene="ybgJ"
/locus_tag="ECs_0736"
/coded_by="BA000007.3:820240..820896"
/transl_table=11
ORIGIN
1 mqrarcylig etavvlelep pvtlasqkri wrlaqrlvdm pnvveaipgm nnitvilrnp
61 eslaldaier lqrwweesea lepesrfiei pvvyggaggp dlavvaahcg lsekqvvelh
121 ssveyvvwfl gfqpgfpylg slpeqlhtpr raeprllvpa gsvgiggpqt gvyplatpgg
181 wqlightsls lfdpardepi llrpgdsvrf vpqkegvc
//