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GenBank: CAB04160.1
Identical Proteins FASTA Graphics
LOCUS CAB04160 367 aa linear INV 18-OCT-2024 DEFINITION F-box domain-containing protein [Caenorhabditis elegans]. ACCESSION CAB04160 VERSION CAB04160.1 DBLINK BioProject: PRJNA13758 DBSOURCE embl accession BX284605.5 KEYWORDS . SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (residues 1 to 367) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED 9851916 REMARK Erratum:[Science 1999 Jan 1;283(5398):35] REFERENCE 2 (residues 1 to 367) AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA REFERENCE 3 (residues 1 to 367) AUTHORS WormBase. CONSRTM WormBase Consortium TITLE Direct Submission JOURNAL Submitted (17-OCT-2024) WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org COMMENT Annotated features correspond to WormBase release WS295. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Location/Qualifiers source 1..367 /organism="Caenorhabditis elegans" /strain="Bristol N2" /db_xref="taxon:6239" /chromosome="V" Protein 1..367 /product="F-box domain-containing protein" Region 23..65 /region_name="F-box" /note="F-box domain; pfam00646" /db_xref="CDD:425796" Region 230..294 /region_name="FBA_2" /note="F-box associated; pfam07735" /db_xref="CDD:429626" CDS 1..367 /gene="F21D9.1" /locus_tag="CELE_F21D9.1" /standard_name="F21D9.1" /coded_by="join(BX284605.5:19264597..19264647, BX284605.5:19264691..19264767, BX284605.5:19265360..19265614, BX284605.5:19267029..19267350, BX284605.5:19268291..19268562, BX284605.5:19269535..19269661)" /note="Confirmed by transcript evidence" ORIGIN 1 mhiskllgtl yfritfkekp fkilnlplvv lknvmnqmni rsifklskts kkmykklrya 61 krniyklvid nhfeydvgnn fpllyqriii fekkndfvsv yramckkkss dpstlakysv 121 hfwvewfyki dkfgerklvn svykyrnakk cwklltrfde lfsidhvdlv idrsklfrfh 181 ttlehplfrk cdyveivksy syltnndmqf vlnnfnlkng mlvkclfwkd fklellfkip 241 rldifnaqqf tldvlikmdc kviklwkhel gphhinqfih lwmagampnl rrlrcndfcs 301 pwqmdeilrg vehskwdger rarifcdgie rincgigddi vrndgvlatv fyinrcvdfl 361 vwhdnkf //
Whole sequence Selected region from: to:
Conserved Domains
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