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F-box domain-containing protein [Caenorhabditis elegans]

GenBank: CAB04160.1

Identical Proteins FASTA Graphics 

LOCUS       CAB04160                 367 aa            linear   INV 18-OCT-2024
DEFINITION  F-box domain-containing protein [Caenorhabditis elegans].
ACCESSION   CAB04160
VERSION     CAB04160.1
DBLINK      BioProject: PRJNA13758
DBSOURCE    embl accession BX284605.5
KEYWORDS    .
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (residues 1 to 367)
  AUTHORS   Sulson,J.E. and Waterston,R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282 (5396), 2012-2018 (1998)
   PUBMED   9851916
  REMARK    Erratum:[Science 1999 Jan 1;283(5398):35]
REFERENCE   2  (residues 1 to 367)
  AUTHORS   Sulson,J.E. and Waterston,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger
            Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute
            at Washington University, St. Louis, MO 63110, USA
REFERENCE   3  (residues 1 to 367)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  TITLE     Direct Submission
  JOURNAL   Submitted (17-OCT-2024) WormBase Group, European Bioinformatics
            Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org
COMMENT     Annotated features correspond to WormBase release WS295.
            Protein-coding gene structures below are the result of integration
            and manual review of the following types of data: ab initio
            predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
            alignments to published proteins and cDNAs; genome sequence
            conservation with other nematodes (e.g. to C. briggsae using WABA:
            Genome Res. 2000. 10:1115-1125); sequence features (such as
            trans-splice and polyA sites).
            Sources of data: large-scale EST projects of Yuji Kohara
            (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
            cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
            sequencing project (Genome Res. 2009. 19:2334-2342); IST library
            (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
            Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
            Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
            sequencing data (454 read clusters - Makedonka Mitreva,
            unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
            Numerous data sets from the modENCODE project (Science. 2010.
            330:1775-87); Individual C. elegans Nucleotide Database
            submissions; Personal communications with C. elegans researchers;
            Non-Coding gene structures below are derived using the following
            methods and data: ab initio prediction of tRNAs by tRNAscan-SE
            (Nucl. Acids. Res., 25, 955-964); integration and appraisal of
            miRNAs from miRBase (http://www.mirbase.org); integration and
            appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
            2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
            manual curation of novel published ncRNAs from the literature.
FEATURES             Location/Qualifiers
     source          1..367
                     /organism="Caenorhabditis elegans"
                     /strain="Bristol N2"
                     /db_xref="taxon:6239"
                     /chromosome="V"
     Protein         1..367
                     /product="F-box domain-containing protein"
     Region          23..65
                     /region_name="F-box"
                     /note="F-box domain; pfam00646"
                     /db_xref="CDD:425796"
     Region          230..294
                     /region_name="FBA_2"
                     /note="F-box associated; pfam07735"
                     /db_xref="CDD:429626"
     CDS             1..367
                     /gene="F21D9.1"
                     /locus_tag="CELE_F21D9.1"
                     /standard_name="F21D9.1"
                     /coded_by="join(BX284605.5:19264597..19264647,
                     BX284605.5:19264691..19264767,
                     BX284605.5:19265360..19265614,
                     BX284605.5:19267029..19267350,
                     BX284605.5:19268291..19268562,
                     BX284605.5:19269535..19269661)"
                     /note="Confirmed by transcript evidence"
ORIGIN      
        1 mhiskllgtl yfritfkekp fkilnlplvv lknvmnqmni rsifklskts kkmykklrya
       61 krniyklvid nhfeydvgnn fpllyqriii fekkndfvsv yramckkkss dpstlakysv
      121 hfwvewfyki dkfgerklvn svykyrnakk cwklltrfde lfsidhvdlv idrsklfrfh
      181 ttlehplfrk cdyveivksy syltnndmqf vlnnfnlkng mlvkclfwkd fklellfkip
      241 rldifnaqqf tldvlikmdc kviklwkhel gphhinqfih lwmagampnl rrlrcndfcs
      301 pwqmdeilrg vehskwdger rarifcdgie rincgigddi vrndgvlatv fyinrcvdfl
      361 vwhdnkf
//
Feature
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Reference sequence information

  • RefSeq protein
    See the reference protein sequence for F-box domain-containing protein (NP_507748.1).

More about the F21D9.1 gene

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