U.S. flag

An official website of the United States government

SUF system FeS assembly protein, NifU family [Cutibacterium acnes HL059PA1]

GenBank: EFS54434.1

Identical Proteins FASTA Graphics 

LOCUS       EFS54434                 166 aa            linear   BCT 07-JUN-2013
DEFINITION  SUF system FeS assembly protein, NifU family [Cutibacterium acnes
            HL059PA1].
ACCESSION   EFS54434
VERSION     EFS54434.1
DBLINK      BioProject: PRJNA49215
            BioSample: SAMN00189228
DBSOURCE    accession ADYW01000007.1
KEYWORDS    HIGH_QUALITY_DRAFT.
SOURCE      Cutibacterium acnes HL059PA1
  ORGANISM  Cutibacterium acnes HL059PA1
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Propionibacteriales; Propionibacteriaceae; Cutibacterium.
REFERENCE   1  (residues 1 to 166)
  AUTHORS   Weinstock,G., Sodergren,E., Clifton,S., Fulton,L., Fulton,B.,
            Courtney,L., Fronick,C., Harrison,M., Strong,C., Farmer,C.,
            Delahaunty,K., Markovic,C., Hall,O., Minx,P., Tomlinson,C.,
            Mitreva,M., Hou,S., Chen,J., Wollam,A., Pepin,K.H., Johnson,M.,
            Bhonagiri,V., Zhang,X., Suruliraj,S., Warren,W., Chinwalla,A.,
            Mardis,E.R. and Wilson,R.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-JUL-2010) Genome Sequencing Center, Washington
            University School of Medicine, 4444 Forest Park, St. Louis, MO
            63108, USA
REFERENCE   2  (residues 1 to 166)
  AUTHORS   Weinstock,G., Sodergren,E., Clifton,S., Fulton,L., Fulton,B.,
            Courtney,L., Fronick,C., Harrison,M., Strong,C., Farmer,C.,
            Delahaunty,K., Markovic,C., Hall,O., Minx,P., Tomlinson,C.,
            Mitreva,M., Hou,S., Chen,J., Wollam,A., Pepin,K.H., Johnson,M.,
            Bhonagiri,V., Zhang,X., Suruliraj,S., Warren,W., Chinwalla,A.,
            Mardis,E.R. and Wilson,R.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-AUG-2010) Genome Sequencing Center, Washington
            University School of Medicine, 4444 Forest Park, St. Louis, MO
            63108, USA
COMMENT     Propionibacterium acnes HL059PA1 (No 16S rRNA gene available) is a
            member of the Actinobacteria division of the domain bacteria and
            has been isolated from the skin.
            
            This is a reference genome for the Human Microbiome Project. This
            project is co-owned with the Human Microbiome Project DACC.
            
            The bacterial isolate and source DNA was provided by Huiying Li,
            Ph.D. Department of Molecular and Medical Pharmacology, University
            of California, Los Angeles, 4339 CNSI, 570 Westwood Plaza, Building
            114, Los Angeles, CA 90095, USA. This project is funded by the
            following grant support: 'Metagenomic study of the human skin
            microbiome associated with acne' (1UH2AR057503).
            
            Coding sequences were predicted using GeneMark v3.3 and Glimmer2
            v2.13. Intergenic regions not spanned by GeneMark and Glimmer2 were
            blasted against NCBI's non-redundant (NR) database and predictions
            generated based on protein alignments. tRNA genes were determined
            using tRNAscan-SE 1.23 and non-coding RNA genes by RNAmmer-1.2 and
            Rfam v8.0. Gene names are generated at the contig level and may not
            necessarily reflect any known order or orientation between contigs.
            
            The National Human Genome Research Institute (NHGRI), National
            Institutes of Health (NIH) Acne Demonstration Project is funding
            the sequence characterization of the Propionibacterium acnes
            HL059PA1 genome.
            
            Annotation was added to the contigs in December 2010.
            Product names were updated in June 2013.
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: High-Quality Draft
            Current Finishing Status :: High-Quality Draft
            Assembly Method          :: Velvet v. 0.7.57
            Genome Coverage          :: 69.2x
            Sequencing Technology    :: Illumina
            ##Genome-Assembly-Data-END##
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..166
                     /organism="Cutibacterium acnes HL059PA1"
                     /strain="HL059PA1"
                     /db_xref="HMP:9589"
                     /db_xref="taxon:765091"
     Protein         1..166
                     /product="SUF system FeS assembly protein, NifU family"
     Region          4..139
                     /region_name="IscU_like"
                     /note="Iron-sulfur cluster scaffold-like proteins;
                     cl00528"
                     /db_xref="CDD:444957"
     Site            order(6..9,12..13,38..39,63,65,123..124,126..127)
                     /site_type="other"
                     /note="trimerization site [polypeptide binding]"
                     /db_xref="CDD:143480"
     Site            order(38,63,127)
                     /site_type="active"
                     /db_xref="CDD:143480"
     CDS             1..166
                     /locus_tag="HMPREF9589_00393"
                     /coded_by="ADYW01000007.1:100967..101467"
                     /inference="protein motif:HMMPfam:IPR002871"
                     /inference="protein motif:HMMTigr:IPR011341"
                     /note="KEGG: rxy:Rxyl_1354 0.0033 tRNA
                     (5-methylaminomethyl-2-thiouridylate)-methyltransferase
                     K00566;
                     Psort location: Cytoplasmic, score: 7.50"
                     /transl_table=11
                     /db_xref="InterPro:IPR002871"
                     /db_xref="InterPro:IPR011341"
ORIGIN      
        1 mnveemyqqi ildhyrekhh sglregydae vtqvnpscgd elllrvhvdg dvitdvsyda
       61 vgcsisqast svmtdlvigk tigeaqdlyr gfqemmrsrg tveldediye davafegvak
      121 lmarvkcaml gwsaledsll kvtegspdkv gsvsgtdsne tkeesr
//
Feature
Display: FASTA GenBank Help
Details

Supplemental Content

Change region shown

Customize view

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
External link. Please review our privacy policy.