LOCUS EUB86023 149 aa linear BCT 28-JAN-2014
DEFINITION putative protein family UPF0310 [Pseudomonas sp. GM30].
ACCESSION EUB86023
VERSION EUB86023.1
DBLINK BioProject: PRJNA83079
BioSample: SAMN00839637
DBSOURCE accession AKJP02000012.1
KEYWORDS .
SOURCE Pseudomonas sp. GM30
ORGANISM Pseudomonas sp. GM30
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE 1 (residues 1 to 149)
AUTHORS Brown,S.D., Utturkar,S.M., Klingeman,D.M., Johnson,C.M.,
Martin,S.L., Land,M.L., Lu,T.Y., Schadt,C.W., Doktycz,M.J. and
Pelletier,D.A.
TITLE Twenty-one genome sequences from Pseudomonas species and 19 genome
sequences from diverse bacteria isolated from the rhizosphere and
endosphere of Populus deltoides
JOURNAL J. Bacteriol. 194 (21), 5991-5993 (2012)
PUBMED 23045501
REFERENCE 2 (residues 1 to 149)
AUTHORS Brown,S.D., Utturkar,S.M., Klingeman,D.M., Johnson,C.M.,
Martin,S.L., Land,M.L., Lu,T.-Y., Schadt,C.W., Pelletier,D.A. and
Doktycz,M.J.
TITLE Sequencing of Twenty One Pseudomonas Genomes and Twenty Two Genomes
from Diverse Bacteria Isolated from Populus deltoides Endosphere
Communities
JOURNAL Unpublished
REFERENCE 3 (residues 1 to 149)
AUTHORS Brown,S.D., Utturkar,S.M., Klingeman,D.M., Johnson,C.M.,
Martin,S.L., Land,M.L., Lu,T.-Y.S., Schadt,C.W., Pelletier,D.A. and
Doktycz,M.J.
TITLE Direct Submission
JOURNAL Submitted (07-MAY-2012) Bioscience Division, Oak Ridge National
Laboratory, Bethel Valley Road, Oak Ridge, TN 37831, USA
REFERENCE 4 (residues 1 to 149)
AUTHORS Brown,S.D., Utturkar,S.M., Klingeman,D.M., Johnson,C.M.,
Martin,S.L., Land,M.L., Lu,T.-Y., Schadt,C.W., Pelletier,D.A. and
Doktycz,M.J.
TITLE Direct Submission
JOURNAL Submitted (24-JUL-2013) Bioscience Division, Oak Ridge National
Laboratory, Bethel Valley Road, Oak Ridge, TN 37831, USA
COMMENT Source DNA available from Dale Pelletier at Bioscience Division,
Oak Ridge National Laboratory, Oak Ridge, TN, USA.
##Genome-Assembly-Data-START##
Assembly Method :: Newbler v. 2.8
Assembly Name :: Pseudomonas.strGM30_v2.0
Genome Coverage :: 582x
Sequencing Technology :: Illumina HiSeq2000; Roche 454
##Genome-Assembly-Data-END##
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..149
/organism="Pseudomonas sp. GM30"
/strain="GM30"
/isolation_source="root"
/host="Populus deltoides"
/db_xref="taxon:1144328"
/geo_loc_name="USA: Tennessee"
/collection_date="01-Oct-2009"
Protein 1..149
/product="putative protein family UPF0310"
Region 2..148
/region_name="EVE"
/note="EVE domains are putative RNA-binding domains that
belong to the PUA superfamily; cd21133"
/db_xref="CDD:410978"
CDS 1..149
/locus_tag="PMI25_004872"
/coded_by="complement(AKJP02000012.1:39034..39483)"
/inference="protein motif:PFAM:PF01878"
/note="PFAM: Uncharacterized protein family UPF0310;
KEGG: hypothetical protein"
/transl_table=11
/db_xref="InterPro:IPR002740"
ORIGIN
1 maywlmksep delsikglek lgtarwdgvr nyqarnflra mavgdefffy hsscpepgia
61 gigriiqaay pdptalepes hyfdpkatpe knawsaidva hvetfarvlk ldylkqqtal
121 aemplvqkgs rlsvmpvtae qwaavlglr
//