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GenBank: KAA3533788.1
Identical Proteins FASTA Graphics
LOCUS KAA3533788 394 aa linear BCT 18-SEP-2019 DEFINITION sugar efflux transporter [Escherichia coli]. ACCESSION KAA3533788 VERSION KAA3533788.1 DBLINK BioProject: PRJNA486965 BioSample: SAMN09862358 DBSOURCE accession QWFG01000038.1 KEYWORDS . SOURCE Escherichia coli ORGANISM Escherichia coli Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia. REFERENCE 1 (residues 1 to 394) AUTHORS Adelowo,O., Vollmers,J., Kaster,A.-K. and Mueller,J.A. TITLE Antibiotic resistant bacteria from an urban wetland polluted by untreated sewage in Ibadan, Southwestern Nigeria JOURNAL Unpublished REFERENCE 2 (residues 1 to 394) AUTHORS Adelowo,O., Vollmers,J., Kaster,A.-K. and Mueller,J.A. TITLE Direct Submission JOURNAL Submitted (22-AUG-2018) Environmental Biotechnology, Helmholtz Centre for Environmental Research - UFZ GmbH, Permoserstrasse 15, Leipzig 04318, Germany COMMENT Bacteria available from Jochen A. Mueller, UFZ, Leipzig, Germany. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 16-JAN-2017 Assembly Method :: SPAdes v. 3.6.2 Assembly Name :: CC33 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 116x Sequencing Technology :: Illumina MiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 08/27/2018 15:54:32 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 5,050 CDS (total) :: 4,955 Genes (coding) :: 4,715 CDS (coding) :: 4,715 Genes (RNA) :: 95 rRNAs :: 4, 2, 2 (5S, 16S, 23S) complete rRNAs :: 1, 1 (16S, 23S) partial rRNAs :: 4, 1, 1 (5S, 16S, 23S) tRNAs :: 71 ncRNAs :: 16 Pseudo Genes (total) :: 240 Pseudo Genes (ambiguous residues) :: 0 of 240 Pseudo Genes (frameshifted) :: 87 of 240 Pseudo Genes (incomplete) :: 126 of 240 Pseudo Genes (internal stop) :: 58 of 240 Pseudo Genes (multiple problems) :: 29 of 240 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..394 /organism="Escherichia coli" /strain="CC33" /isolation_source="water" /db_xref="taxon:562" /geo_loc_name="Nigeria: Ibadan" /lat_lon="7.4468 N 3.8763 E" /collection_date="Dec-2014" Protein 1..394 /product="sugar efflux transporter" Region 5..394 /region_name="PRK15011" /note="sugar efflux transporter SetB" /db_xref="CDD:184973" CDS 1..394 /locus_tag="D1169_21715" /coded_by="QWFG01000038.1:19321..20505" /inference="COORDINATES: similar to AA sequence:RefSeq:YP_002414811.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 ORIGIN 1 mqktattpsk ildltaaafl lvafltsiag alqtptlsif ladelkarpi mvgffftgsa 61 imgilvsqfl arhsdkqgdr kllillcclf gvlactlfaw nrnyfillst gvllssfast 121 anpqmfalar ehadrtgret vmfstflraq islawvigpp layelamgfs fkvmyltaai 181 afvvcglivw lflpsiqrni pvvtqpveil psthrkrdtr llfvvcsmmw aannlyminm 241 plfiidelhl tdklagemig iaagleipmm liagyymkri gkrllmliai vsgmcfyasv 301 lmattpavel elqilnaifl gilcgigmly fqdlmpekig sattlyants rvgwiiagsv 361 dgimveiwsy halfwlaigm lgiamicllf ikdi //
Whole sequence Selected region from: to:
Conserved Domains
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