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sugar efflux transporter [Escherichia coli]

GenBank: KAA3533788.1

Identical Proteins FASTA Graphics 

LOCUS       KAA3533788               394 aa            linear   BCT 18-SEP-2019
DEFINITION  sugar efflux transporter [Escherichia coli].
ACCESSION   KAA3533788
VERSION     KAA3533788.1
DBLINK      BioProject: PRJNA486965
            BioSample: SAMN09862358
DBSOURCE    accession QWFG01000038.1
KEYWORDS    .
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Escherichia.
REFERENCE   1  (residues 1 to 394)
  AUTHORS   Adelowo,O., Vollmers,J., Kaster,A.-K. and Mueller,J.A.
  TITLE     Antibiotic resistant bacteria from an urban wetland polluted by
            untreated sewage in Ibadan, Southwestern Nigeria
  JOURNAL   Unpublished
REFERENCE   2  (residues 1 to 394)
  AUTHORS   Adelowo,O., Vollmers,J., Kaster,A.-K. and Mueller,J.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-AUG-2018) Environmental Biotechnology, Helmholtz
            Centre for Environmental Research - UFZ GmbH, Permoserstrasse 15,
            Leipzig 04318, Germany
COMMENT     Bacteria available from Jochen A. Mueller, UFZ, Leipzig, Germany.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 16-JAN-2017
            Assembly Method        :: SPAdes v. 3.6.2
            Assembly Name          :: CC33
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 116x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 08/27/2018 15:54:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 5,050
            CDS (total)                       :: 4,955
            Genes (coding)                    :: 4,715
            CDS (coding)                      :: 4,715
            Genes (RNA)                       :: 95
            rRNAs                             :: 4, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 4, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 16
            Pseudo Genes (total)              :: 240
            Pseudo Genes (ambiguous residues) :: 0 of 240
            Pseudo Genes (frameshifted)       :: 87 of 240
            Pseudo Genes (incomplete)         :: 126 of 240
            Pseudo Genes (internal stop)      :: 58 of 240
            Pseudo Genes (multiple problems)  :: 29 of 240
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..394
                     /organism="Escherichia coli"
                     /strain="CC33"
                     /isolation_source="water"
                     /db_xref="taxon:562"
                     /geo_loc_name="Nigeria: Ibadan"
                     /lat_lon="7.4468 N 3.8763 E"
                     /collection_date="Dec-2014"
     Protein         1..394
                     /product="sugar efflux transporter"
     Region          5..394
                     /region_name="PRK15011"
                     /note="sugar efflux transporter SetB"
                     /db_xref="CDD:184973"
     CDS             1..394
                     /locus_tag="D1169_21715"
                     /coded_by="QWFG01000038.1:19321..20505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002414811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
ORIGIN      
        1 mqktattpsk ildltaaafl lvafltsiag alqtptlsif ladelkarpi mvgffftgsa
       61 imgilvsqfl arhsdkqgdr kllillcclf gvlactlfaw nrnyfillst gvllssfast
      121 anpqmfalar ehadrtgret vmfstflraq islawvigpp layelamgfs fkvmyltaai
      181 afvvcglivw lflpsiqrni pvvtqpveil psthrkrdtr llfvvcsmmw aannlyminm
      241 plfiidelhl tdklagemig iaagleipmm liagyymkri gkrllmliai vsgmcfyasv
      301 lmattpavel elqilnaifl gilcgigmly fqdlmpekig sattlyants rvgwiiagsv
      361 dgimveiwsy halfwlaigm lgiamicllf ikdi
//
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