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helix-turn-helix transcriptional regulator [Raoultella ornithinolytica]

GenBank: KAB8143170.1

Identical Proteins FASTA Graphics 

LOCUS       KAB8143170                93 aa            linear   BCT 22-OCT-2019
DEFINITION  helix-turn-helix transcriptional regulator [Raoultella
            ornithinolytica].
ACCESSION   KAB8143170
VERSION     KAB8143170.1
DBLINK      BioProject: PRJNA553627
            BioSample: SAMN12241748
DBSOURCE    accession VJYF01000056.1
KEYWORDS    .
SOURCE      Raoultella ornithinolytica
  ORGANISM  Raoultella ornithinolytica
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Klebsiella/Raoultella group;
            Raoultella.
REFERENCE   1  (residues 1 to 93)
  AUTHORS   Wang,S.
  TITLE     NDM-1-producing R. ornithinolytica from gut microbiota
  JOURNAL   Unpublished
REFERENCE   2  (residues 1 to 93)
  AUTHORS   Wang,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JUL-2019) Bacteria Department, Shandong CDC,
            Qianfoshan, Jinan 250014, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 3.10.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 300x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 07/12/2019 11:51:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 5,807
            CDSs (total)                      :: 5,689
            Genes (coding)                    :: 5,492
            CDSs (with protein)               :: 5,492
            Genes (RNA)                       :: 118
            rRNAs                             :: 9, 4, 10 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 1 (5S, 16S)
            partial rRNAs                     :: 3, 10 (16S, 23S)
            tRNAs                             :: 80
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 197
            CDSs (without protein)            :: 197
            Pseudo Genes (ambiguous residues) :: 0 of 197
            Pseudo Genes (frameshifted)       :: 69 of 197
            Pseudo Genes (incomplete)         :: 130 of 197
            Pseudo Genes (internal stop)      :: 35 of 197
            Pseudo Genes (multiple problems)  :: 31 of 197
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..93
                     /organism="Raoultella ornithinolytica"
                     /strain="1BI014"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:54291"
                     /geo_loc_name="China: Shandong, Weifang"
                     /collection_date="11-Mar-2017"
                     /collected_by="Baoli Chen"
     Protein         1..93
                     /product="helix-turn-helix transcriptional regulator"
     Region          37..86
                     /region_name="HTH_XRE"
                     /note="Helix-turn-helix XRE-family like proteins;
                     smart00530"
                     /db_xref="CDD:197775"
     Site            order(40,65)
                     /site_type="active"
                     /note="salt bridge [active]"
                     /db_xref="CDD:238045"
     Site            order(47..48,59,62,66..67)
                     /site_type="other"
                     /note="sequence-specific DNA binding site [nucleotide
                     binding]"
                     /db_xref="CDD:238045"
     CDS             1..93
                     /locus_tag="FNV34_26890"
                     /coded_by="VJYF01000056.1:1477..1758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019077272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
ORIGIN      
        1 mklvshkelh newmqddeyr aawqeeerke klrellaewr khdnltkaqv aermgvtppv
       61 isrlennitk asidtltrya hacgikkpvi aly
//
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Reference sequence information

  • RefSeq protein
    See the reference protein sequence for MULTISPECIES: helix-turn-helix domain-containing protein (WP_000780222.1).

More about the gene Q1L34_RS28115

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