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GenBank: KAB8143170.1
Identical Proteins FASTA Graphics
LOCUS KAB8143170 93 aa linear BCT 22-OCT-2019 DEFINITION helix-turn-helix transcriptional regulator [Raoultella ornithinolytica]. ACCESSION KAB8143170 VERSION KAB8143170.1 DBLINK BioProject: PRJNA553627 BioSample: SAMN12241748 DBSOURCE accession VJYF01000056.1 KEYWORDS . SOURCE Raoultella ornithinolytica ORGANISM Raoultella ornithinolytica Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Klebsiella/Raoultella group; Raoultella. REFERENCE 1 (residues 1 to 93) AUTHORS Wang,S. TITLE NDM-1-producing R. ornithinolytica from gut microbiota JOURNAL Unpublished REFERENCE 2 (residues 1 to 93) AUTHORS Wang,S. TITLE Direct Submission JOURNAL Submitted (10-JUL-2019) Bacteria Department, Shandong CDC, Qianfoshan, Jinan 250014, China COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 3.10.1 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 300x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 07/12/2019 11:51:35 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.8 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 5,807 CDSs (total) :: 5,689 Genes (coding) :: 5,492 CDSs (with protein) :: 5,492 Genes (RNA) :: 118 rRNAs :: 9, 4, 10 (5S, 16S, 23S) complete rRNAs :: 9, 1 (5S, 16S) partial rRNAs :: 3, 10 (16S, 23S) tRNAs :: 80 ncRNAs :: 15 Pseudo Genes (total) :: 197 CDSs (without protein) :: 197 Pseudo Genes (ambiguous residues) :: 0 of 197 Pseudo Genes (frameshifted) :: 69 of 197 Pseudo Genes (incomplete) :: 130 of 197 Pseudo Genes (internal stop) :: 35 of 197 Pseudo Genes (multiple problems) :: 31 of 197 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..93 /organism="Raoultella ornithinolytica" /strain="1BI014" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:54291" /geo_loc_name="China: Shandong, Weifang" /collection_date="11-Mar-2017" /collected_by="Baoli Chen" Protein 1..93 /product="helix-turn-helix transcriptional regulator" Region 37..86 /region_name="HTH_XRE" /note="Helix-turn-helix XRE-family like proteins; smart00530" /db_xref="CDD:197775" Site order(40,65) /site_type="active" /note="salt bridge [active]" /db_xref="CDD:238045" Site order(47..48,59,62,66..67) /site_type="other" /note="sequence-specific DNA binding site [nucleotide binding]" /db_xref="CDD:238045" CDS 1..93 /locus_tag="FNV34_26890" /coded_by="VJYF01000056.1:1477..1758" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_019077272.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 ORIGIN 1 mklvshkelh newmqddeyr aawqeeerke klrellaewr khdnltkaqv aermgvtppv 61 isrlennitk asidtltrya hacgikkpvi aly //
Whole sequence Selected region from: to:
Conserved Domains
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