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GenBank: KXA15267.1
Identical Proteins FASTA Graphics
LOCUS KXA15267 344 aa linear BCT 02-FEB-2016 DEFINITION BAAT/acyl-CoA thioester hydrolase protein [Gardnerella pickettii]. ACCESSION KXA15267 VERSION KXA15267.1 DBLINK BioProject: PRJNA272096 BioSample: SAMN03851014 DBSOURCE accession LRPZ01000045.1 KEYWORDS HIGH_QUALITY_DRAFT. SOURCE Gardnerella pickettii ORGANISM Gardnerella pickettii Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Gardnerella. REFERENCE 1 (residues 1 to 344) AUTHORS Mitreva,M., Pepin,K.H., Mihindukulasuriya,K.A., Fulton,R., Fronick,C., O'Laughlin,M., Miner,T., Herter,B., Rosa,B.A., Cordes,M., Tomlinson,C., Wollam,A., Palsikar,V.B., Mardis,E.R. and Wilson,R.K. TITLE Direct Submission JOURNAL Submitted (06-JAN-2016) McDonnell Genome Institute, Washington University School of Medicine, 4444 Forest Park, St. Louis, MO 63108, USA COMMENT Bacteria and source DNA were provide by Amanda Lewis, Ph.D. (lewis@borcim.wustl.edu), Washington University School of Medicine, Department of Molecular Microbiology and Obstetrics and Gynecology - Center for Women's Infectious Disease Research, Campus Box 8230 660 S. Euclid Ave. St. Louis, MO 63110. Collection of this isolate was part of the ###Polymicrobial Synergy Study,### which was funded in part by the National Institutes of Health grant P50 DK064540-11. Coding sequences were predicted using GeneMark and Glimmer3. Intergenic regions not spanned by GeneMark and Glimmer3 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. tRNA genes were determined using tRNAscan-SE and non-coding RNA genes by RNAmmer and Rfam. The final gene set is processed through several programs such as Kegg, psortB and Interproscan to determine possible function. Gene product names are determined by BER. Gene names are generated at the contig level and may not necessarily reflect any known order or orientation between contigs. This is a reference genomes for the Human Microbiome Project and the work was funded by the National Institutes of Health (NIH) grant U54 HG004968. ##Genome-Assembly-Data-START## Finishing Goal :: High-Quality Draft Current Finishing Status :: High-Quality Draft Assembly Method :: Velvet v. 1.1.06 Genome Coverage :: 104x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## Method: conceptual translation. FEATURES Location/Qualifiers source 1..344 /organism="Gardnerella pickettii" /strain="GED7275B" /isolation_source="Vagina" /host="Homo sapiens" /db_xref="taxon:2914924" Protein 1..344 /product="BAAT/acyl-CoA thioester hydrolase protein" Region 130..341 /region_name="alpha/beta hydrolases" /note="A functionally diverse superfamily containing proteases, lipases, peroxidases, esterases, epoxide hydrolases and dehalogenases. The catalytic apparatus typically involves three residues (catalytic triad): a serine, a glutamate or aspartate and a...; cl21494" /db_xref="CDD:473884" CDS 1..344 /locus_tag="HMPREF3204_01166" /coded_by="LRPZ01000045.1:26853..27887" /inference="protein motif:HMMPfam:IPR014940" /note="KEGG: ppo:PPM_2247 1.6e-25 M1_2542; putative acyl-CoA thioesterase" /transl_table=11 /db_xref="InterPro:IPR014940" ORIGIN 1 mkkmkkiffg ifsviiilvv lvfslriynd hkykdinaln fpeyykdvtn islyptdidg 61 vdvtyvdegr mqgfrfvpke kshkglvicf ggsegspnfe nakilakegy etfalfmfgm 121 knqestltki pleqfddvin yinknikdnk pisvlgaskg aeyalnlack ypeidnlili 181 spssynfagl dfkdygsswt ykgeqlpyid ikkssfssfl kniivptiik spisyketye 241 saieqdsssq eklipvknvk anilmmaged dlmwdsfama kkikeqnpna kiysykgagh 301 ifagngvlnl gririatggt iesndkarse srktidaflk enhk //
Whole sequence Selected region from: to:
Conserved Domains
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