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GenBank: KXA61777.1
Identical Proteins FASTA Graphics
LOCUS KXA61777 148 aa linear BCT 02-FEB-2016 DEFINITION DNA-binding helix-turn-helix protein [Veillonella atypica]. ACCESSION KXA61777 VERSION KXA61777.1 DBLINK BioProject: PRJNA272125 BioSample: SAMN03956213 DBSOURCE accession LRQT01000109.1 KEYWORDS HIGH_QUALITY_DRAFT. SOURCE Veillonella atypica ORGANISM Veillonella atypica Bacteria; Bacillati; Bacillota; Negativicutes; Veillonellales; Veillonellaceae; Veillonella. REFERENCE 1 (residues 1 to 148) AUTHORS Mitreva,M., Pepin,K.H., Mihindukulasuriya,K.A., Fulton,R., Fronick,C., O'Laughlin,M., Miner,T., Herter,B., Rosa,B.A., Cordes,M., Tomlinson,C., Wollam,A., Palsikar,V.B., Mardis,E.R. and Wilson,R.K. TITLE Direct Submission JOURNAL Submitted (06-JAN-2016) McDonnell Genome Institute, Washington University School of Medicine, 4444 Forest Park, St. Louis, MO 63108, USA COMMENT Bacteria and source DNA were provide by Amanda Lewis, Ph.D. (lewis@borcim.wustl.edu), Washington University School of Medicine, Department of Molecular Microbiology and Obstetrics and Gynecology - Center for Women's Infectious Disease Research, Campus Box 8230 660 S. Euclid Ave. St. Louis, MO 63110. Collection of this isolate was part of the ###Polymicrobial Synergy Study,### which was funded in part by the National Institutes of Health grant P50 DK064540-11. Coding sequences were predicted using GeneMark and Glimmer3. Intergenic regions not spanned by GeneMark and Glimmer3 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. tRNA genes were determined using tRNAscan-SE and non-coding RNA genes by RNAmmer and Rfam. The final gene set is processed through several programs such as Kegg, psortB and Interproscan to determine possible function. Gene product names are determined by BER. Gene names are generated at the contig level and may not necessarily reflect any known order or orientation between contigs. This is a reference genomes for the Human Microbiome Project and the work was funded by the National Institutes of Health (NIH) grant U54 HG004968. ##Genome-Assembly-Data-START## Finishing Goal :: High-Quality Draft Current Finishing Status :: High-Quality Draft Assembly Method :: Velvet v. 1.1.06 Genome Coverage :: 99x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## Method: conceptual translation. FEATURES Location/Qualifiers source 1..148 /organism="Veillonella atypica" /strain="CMW7756B" /isolation_source="Vagina" /host="Homo sapiens" /db_xref="taxon:39777" Protein 1..148 /product="DNA-binding helix-turn-helix protein" Region 1..71 /region_name="HipB" /note="Transcriptional regulator, contains XRE-family HTH domain [Transcription]; COG1396" /db_xref="CDD:441006" CDS 1..148 /locus_tag="HMPREF3233_01861" /coded_by="LRQT01000109.1:14336..14782" /inference="protein motif:HMMPfam:IPR001387" /note="KEGG: mmo:MMOB3450 0.0011 dam; adenine-specific DNA methyltransferase K06223; Psort location: Cytoplasmic, score: 8.96" /transl_table=11 /db_xref="InterPro:IPR001387" ORIGIN 1 mqfyknlkra rvrmgksqie vakavgisna alsnyetgyr epdldtlcal aryyeltlde 61 lvnvnneqqe riydistvvk dthikfkgdl yelkasqkkv llreldtvfe kfqrsritsi 121 kegtshrhph inrggllgan lavsrgkk //
Whole sequence Selected region from: to:
Conserved Domains
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