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DNA-binding helix-turn-helix protein [Veillonella atypica]

GenBank: KXA61777.1

Identical Proteins FASTA Graphics 

LOCUS       KXA61777                 148 aa            linear   BCT 02-FEB-2016
DEFINITION  DNA-binding helix-turn-helix protein [Veillonella atypica].
ACCESSION   KXA61777
VERSION     KXA61777.1
DBLINK      BioProject: PRJNA272125
            BioSample: SAMN03956213
DBSOURCE    accession LRQT01000109.1
KEYWORDS    HIGH_QUALITY_DRAFT.
SOURCE      Veillonella atypica
  ORGANISM  Veillonella atypica
            Bacteria; Bacillati; Bacillota; Negativicutes; Veillonellales;
            Veillonellaceae; Veillonella.
REFERENCE   1  (residues 1 to 148)
  AUTHORS   Mitreva,M., Pepin,K.H., Mihindukulasuriya,K.A., Fulton,R.,
            Fronick,C., O'Laughlin,M., Miner,T., Herter,B., Rosa,B.A.,
            Cordes,M., Tomlinson,C., Wollam,A., Palsikar,V.B., Mardis,E.R. and
            Wilson,R.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-JAN-2016) McDonnell Genome Institute, Washington
            University School of Medicine, 4444 Forest Park, St. Louis, MO
            63108, USA
COMMENT     Bacteria and source DNA were provide by Amanda Lewis, Ph.D.
            (lewis@borcim.wustl.edu), Washington University School of Medicine,
            Department of Molecular Microbiology and Obstetrics and Gynecology
            - Center for Women's Infectious Disease Research, Campus Box 8230
            660 S. Euclid Ave. St. Louis, MO 63110. Collection of this isolate
            was part of the ###Polymicrobial Synergy Study,### which was funded
            in part by the National Institutes of Health grant P50 DK064540-11.
            
            Coding sequences were predicted using GeneMark and Glimmer3.
            Intergenic regions not spanned by GeneMark and Glimmer3 were
            blasted against NCBI's non-redundant (NR) database and predictions
            generated based on protein alignments. tRNA genes were determined
            using tRNAscan-SE and non-coding RNA genes by RNAmmer and Rfam. The
            final gene set is processed through several programs such as Kegg,
            psortB and Interproscan to determine possible function. Gene
            product names are determined by BER. Gene names are generated at
            the contig level and may not necessarily reflect any known order or
            orientation between contigs.
            
            This is a reference genomes for the Human Microbiome Project and
            the work was funded by the National Institutes of Health (NIH)
            grant U54 HG004968.
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: High-Quality Draft
            Current Finishing Status :: High-Quality Draft
            Assembly Method          :: Velvet v. 1.1.06
            Genome Coverage          :: 99x
            Sequencing Technology    :: Illumina
            ##Genome-Assembly-Data-END##
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..148
                     /organism="Veillonella atypica"
                     /strain="CMW7756B"
                     /isolation_source="Vagina"
                     /host="Homo sapiens"
                     /db_xref="taxon:39777"
     Protein         1..148
                     /product="DNA-binding helix-turn-helix protein"
     Region          1..71
                     /region_name="HipB"
                     /note="Transcriptional regulator, contains XRE-family HTH
                     domain [Transcription]; COG1396"
                     /db_xref="CDD:441006"
     CDS             1..148
                     /locus_tag="HMPREF3233_01861"
                     /coded_by="LRQT01000109.1:14336..14782"
                     /inference="protein motif:HMMPfam:IPR001387"
                     /note="KEGG: mmo:MMOB3450 0.0011 dam; adenine-specific DNA
                     methyltransferase K06223;
                     Psort location: Cytoplasmic, score: 8.96"
                     /transl_table=11
                     /db_xref="InterPro:IPR001387"
ORIGIN      
        1 mqfyknlkra rvrmgksqie vakavgisna alsnyetgyr epdldtlcal aryyeltlde
       61 lvnvnneqqe riydistvvk dthikfkgdl yelkasqkkv llreldtvfe kfqrsritsi
      121 kegtshrhph inrggllgan lavsrgkk
//
Feature
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