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Hep/Hag repeat protein, partial [Veillonella atypica]

GenBank: KXA61781.1

Identical Proteins FASTA Graphics 

LOCUS       KXA61781                1898 aa            linear   BCT 02-FEB-2016
DEFINITION  Hep/Hag repeat protein, partial [Veillonella atypica].
ACCESSION   KXA61781
VERSION     KXA61781.1
DBLINK      BioProject: PRJNA272125
            BioSample: SAMN03956213
DBSOURCE    accession LRQT01000109.1
KEYWORDS    HIGH_QUALITY_DRAFT.
SOURCE      Veillonella atypica
  ORGANISM  Veillonella atypica
            Bacteria; Bacillati; Bacillota; Negativicutes; Veillonellales;
            Veillonellaceae; Veillonella.
REFERENCE   1  (residues 1 to 1898)
  AUTHORS   Mitreva,M., Pepin,K.H., Mihindukulasuriya,K.A., Fulton,R.,
            Fronick,C., O'Laughlin,M., Miner,T., Herter,B., Rosa,B.A.,
            Cordes,M., Tomlinson,C., Wollam,A., Palsikar,V.B., Mardis,E.R. and
            Wilson,R.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-JAN-2016) McDonnell Genome Institute, Washington
            University School of Medicine, 4444 Forest Park, St. Louis, MO
            63108, USA
COMMENT     Bacteria and source DNA were provide by Amanda Lewis, Ph.D.
            (lewis@borcim.wustl.edu), Washington University School of Medicine,
            Department of Molecular Microbiology and Obstetrics and Gynecology
            - Center for Women's Infectious Disease Research, Campus Box 8230
            660 S. Euclid Ave. St. Louis, MO 63110. Collection of this isolate
            was part of the ###Polymicrobial Synergy Study,### which was funded
            in part by the National Institutes of Health grant P50 DK064540-11.
            
            Coding sequences were predicted using GeneMark and Glimmer3.
            Intergenic regions not spanned by GeneMark and Glimmer3 were
            blasted against NCBI's non-redundant (NR) database and predictions
            generated based on protein alignments. tRNA genes were determined
            using tRNAscan-SE and non-coding RNA genes by RNAmmer and Rfam. The
            final gene set is processed through several programs such as Kegg,
            psortB and Interproscan to determine possible function. Gene
            product names are determined by BER. Gene names are generated at
            the contig level and may not necessarily reflect any known order or
            orientation between contigs.
            
            This is a reference genomes for the Human Microbiome Project and
            the work was funded by the National Institutes of Health (NIH)
            grant U54 HG004968.
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: High-Quality Draft
            Current Finishing Status :: High-Quality Draft
            Assembly Method          :: Velvet v. 1.1.06
            Genome Coverage          :: 99x
            Sequencing Technology    :: Illumina
            ##Genome-Assembly-Data-END##
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..1898
                     /organism="Veillonella atypica"
                     /strain="CMW7756B"
                     /isolation_source="Vagina"
                     /host="Homo sapiens"
                     /db_xref="taxon:39777"
     Protein         1..>1898
                     /product="Hep/Hag repeat protein"
     Region          4..44
                     /region_name="ESPR"
                     /note="Extended Signal Peptide of Type V secretion system;
                     pfam13018"
                     /db_xref="CDD:463773"
     Region          72..1760
                     /region_name="FhaB"
                     /note="Large exoprotein involved in heme utilization or
                     adhesion [Intracellular trafficking, secretion, and
                     vesicular transport]; COG3210"
                     /db_xref="CDD:442443"
     CDS             1..1898
                     /locus_tag="HMPREF3233_01865"
                     /coded_by="LRQT01000109.1:18647..>24339"
                     /inference="protein motif:HMMPfam:IPR008635"
                     /inference="protein motif:HMMPfam:IPR008640"
                     /inference="protein motif:HMMPfam:IPR024973"
                     /note="KEGG: eci:UTI89_C4143 1.4e-68 autotransport
                     adhesin"
                     /transl_table=11
                     /db_xref="InterPro:IPR008635"
                     /db_xref="InterPro:IPR008640"
                     /db_xref="InterPro:IPR024973"
ORIGIN      
        1 mglnhiykvi wsktknawvv vseiakrdgk ssvksvvtsl agksaaavmv amvmcggvas
       61 antvygpgai vngsnstaig dnanidnlsk dsvaigpnas iingtdsvsi gssssskdfg
      121 iaiggaakss dtgaiaigrh tnskkkdsit igtyadndgg siligrgsti dnydpsrtsr
      181 sgiligdasr sidvgsigig ngvsigstsl ssrnsyaiai gdasrvagqd sivightans
      241 dssnsnytva igsgartegs hsialgsvva nhdyaiaigt etmssgdgsi aigrsakike
      301 nyitpssnsi algqevsvdg atsiamgygv rvdanrtvai gsnnrhsnvl pydwmpivas
      361 dsvvlgynhq ldnsssskit tlgyhntvda srtivignei vvandlegav vlgdsseasp
      421 yvrandvtis gmtiqsnsfa gnsgskgsil sigassnnrq iknvaagvis ststdaings
      481 qlyeavravt agaspdvymh vndgtstqga gggnnlgkan eksgalgnys iavgrnaqsk
      541 gtnsisigyq sgttndqsia iggnahvnss hsiaigdnan asgtysiamg assvngdknl
      601 alnnsyvysg ndsvaingsl vagnnniaig gayigagrty srdasgnpts nignmqtaap
      661 tlgisnmqge qylepvknsi aignnayvtr sntivmgdkt fdniksskta tdfiaptksk
      721 fssifsgsin lyhegtlgns iylghdsyaf tpdaltdgen sssgensiht kkydatgniv
      781 vsnnttggaf gkvskating deitgfagaq svgavtigag dyerriqnva agevsatstd
      841 gingsqlyav adtlsknmss ymhindgtst qtvgnattny gysgskagat gtkaiaggvn
      901 aqatgeesia lglganasgn ytlaqgsgat assvgsialg rgaavntiat gsiaigsnaa
      961 vtnysgvaig assrvesvsg talngsvstn senavaigyn srinrnsnks isinglvsnn
     1021 spnslsalgt vtgsnninig ggigydgyvk gltpgitdti anlsvsnsva vgsgsnatsn
     1081 ntivigksar sydtangfip rnsrnasdfi sptkvassli ttgvsqgdvy ldgtlensvy
     1141 lgvnseaitk dslvdgenss sgensihtkk ydstgnivvs nnttggafgk vskatingde
     1201 itgfagtqav gavtigagdy erriqnvaag evsatstdgi ngsqlyavad tlsknmssym
     1261 hindgtstqt vgnattnygy sgskagatgt ksiaggmnaq asgeeaiaig sgakasgeks
     1321 isigtgnevk gnkssaigdp syidttatgt hvhgndngta tnpikasest fmgntnlagt
     1381 agttgihvvg nsntvdssnv mvmgngvnvg tgldgavvlg nassadqyaa atdstingvt
     1441 feaagyagnt glnngsivsv gatgverqik nvaagavtat stdaingsql yktaetilkm
     1501 pinmagdsgd tvglklgktv nikgsvasga dvtdgniavv gdkatstlsl kmaknltglt
     1561 sgtftdatgn qtvingagvt vtptgtgatp isittsgina gnqeikgvkk gttddaavnk
     1621 kqmddalagi sstltindgt tdgsvniktg klkvvgesga nalvtttvsg dtisvgtstk
     1681 lqnavtaaek sadkdlsnls atgsdkvktl aqdavkvagt glatvsdata agvktytvnv
     1741 degklviddt tgkigaagas qgtvqgkdgv attqnvasvv nsaidktkqa lddakhnfag
     1801 ddatvisrkh geqlnikgga sttasdltsg niavvgdtts gtlnikmaka ltgltsatyt
     1861 dgsgntqtvt ggsttiadaa gnstvvskgg vtttdaag
//
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