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GenBank: KXA61781.1
Identical Proteins FASTA Graphics
LOCUS KXA61781 1898 aa linear BCT 02-FEB-2016 DEFINITION Hep/Hag repeat protein, partial [Veillonella atypica]. ACCESSION KXA61781 VERSION KXA61781.1 DBLINK BioProject: PRJNA272125 BioSample: SAMN03956213 DBSOURCE accession LRQT01000109.1 KEYWORDS HIGH_QUALITY_DRAFT. SOURCE Veillonella atypica ORGANISM Veillonella atypica Bacteria; Bacillati; Bacillota; Negativicutes; Veillonellales; Veillonellaceae; Veillonella. REFERENCE 1 (residues 1 to 1898) AUTHORS Mitreva,M., Pepin,K.H., Mihindukulasuriya,K.A., Fulton,R., Fronick,C., O'Laughlin,M., Miner,T., Herter,B., Rosa,B.A., Cordes,M., Tomlinson,C., Wollam,A., Palsikar,V.B., Mardis,E.R. and Wilson,R.K. TITLE Direct Submission JOURNAL Submitted (06-JAN-2016) McDonnell Genome Institute, Washington University School of Medicine, 4444 Forest Park, St. Louis, MO 63108, USA COMMENT Bacteria and source DNA were provide by Amanda Lewis, Ph.D. (lewis@borcim.wustl.edu), Washington University School of Medicine, Department of Molecular Microbiology and Obstetrics and Gynecology - Center for Women's Infectious Disease Research, Campus Box 8230 660 S. Euclid Ave. St. Louis, MO 63110. Collection of this isolate was part of the ###Polymicrobial Synergy Study,### which was funded in part by the National Institutes of Health grant P50 DK064540-11. Coding sequences were predicted using GeneMark and Glimmer3. Intergenic regions not spanned by GeneMark and Glimmer3 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. tRNA genes were determined using tRNAscan-SE and non-coding RNA genes by RNAmmer and Rfam. The final gene set is processed through several programs such as Kegg, psortB and Interproscan to determine possible function. Gene product names are determined by BER. Gene names are generated at the contig level and may not necessarily reflect any known order or orientation between contigs. This is a reference genomes for the Human Microbiome Project and the work was funded by the National Institutes of Health (NIH) grant U54 HG004968. ##Genome-Assembly-Data-START## Finishing Goal :: High-Quality Draft Current Finishing Status :: High-Quality Draft Assembly Method :: Velvet v. 1.1.06 Genome Coverage :: 99x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## Method: conceptual translation. FEATURES Location/Qualifiers source 1..1898 /organism="Veillonella atypica" /strain="CMW7756B" /isolation_source="Vagina" /host="Homo sapiens" /db_xref="taxon:39777" Protein 1..>1898 /product="Hep/Hag repeat protein" Region 4..44 /region_name="ESPR" /note="Extended Signal Peptide of Type V secretion system; pfam13018" /db_xref="CDD:463773" Region 72..1760 /region_name="FhaB" /note="Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport]; COG3210" /db_xref="CDD:442443" CDS 1..1898 /locus_tag="HMPREF3233_01865" /coded_by="LRQT01000109.1:18647..>24339" /inference="protein motif:HMMPfam:IPR008635" /inference="protein motif:HMMPfam:IPR008640" /inference="protein motif:HMMPfam:IPR024973" /note="KEGG: eci:UTI89_C4143 1.4e-68 autotransport adhesin" /transl_table=11 /db_xref="InterPro:IPR008635" /db_xref="InterPro:IPR008640" /db_xref="InterPro:IPR024973" ORIGIN 1 mglnhiykvi wsktknawvv vseiakrdgk ssvksvvtsl agksaaavmv amvmcggvas 61 antvygpgai vngsnstaig dnanidnlsk dsvaigpnas iingtdsvsi gssssskdfg 121 iaiggaakss dtgaiaigrh tnskkkdsit igtyadndgg siligrgsti dnydpsrtsr 181 sgiligdasr sidvgsigig ngvsigstsl ssrnsyaiai gdasrvagqd sivightans 241 dssnsnytva igsgartegs hsialgsvva nhdyaiaigt etmssgdgsi aigrsakike 301 nyitpssnsi algqevsvdg atsiamgygv rvdanrtvai gsnnrhsnvl pydwmpivas 361 dsvvlgynhq ldnsssskit tlgyhntvda srtivignei vvandlegav vlgdsseasp 421 yvrandvtis gmtiqsnsfa gnsgskgsil sigassnnrq iknvaagvis ststdaings 481 qlyeavravt agaspdvymh vndgtstqga gggnnlgkan eksgalgnys iavgrnaqsk 541 gtnsisigyq sgttndqsia iggnahvnss hsiaigdnan asgtysiamg assvngdknl 601 alnnsyvysg ndsvaingsl vagnnniaig gayigagrty srdasgnpts nignmqtaap 661 tlgisnmqge qylepvknsi aignnayvtr sntivmgdkt fdniksskta tdfiaptksk 721 fssifsgsin lyhegtlgns iylghdsyaf tpdaltdgen sssgensiht kkydatgniv 781 vsnnttggaf gkvskating deitgfagaq svgavtigag dyerriqnva agevsatstd 841 gingsqlyav adtlsknmss ymhindgtst qtvgnattny gysgskagat gtkaiaggvn 901 aqatgeesia lglganasgn ytlaqgsgat assvgsialg rgaavntiat gsiaigsnaa 961 vtnysgvaig assrvesvsg talngsvstn senavaigyn srinrnsnks isinglvsnn 1021 spnslsalgt vtgsnninig ggigydgyvk gltpgitdti anlsvsnsva vgsgsnatsn 1081 ntivigksar sydtangfip rnsrnasdfi sptkvassli ttgvsqgdvy ldgtlensvy 1141 lgvnseaitk dslvdgenss sgensihtkk ydstgnivvs nnttggafgk vskatingde 1201 itgfagtqav gavtigagdy erriqnvaag evsatstdgi ngsqlyavad tlsknmssym 1261 hindgtstqt vgnattnygy sgskagatgt ksiaggmnaq asgeeaiaig sgakasgeks 1321 isigtgnevk gnkssaigdp syidttatgt hvhgndngta tnpikasest fmgntnlagt 1381 agttgihvvg nsntvdssnv mvmgngvnvg tgldgavvlg nassadqyaa atdstingvt 1441 feaagyagnt glnngsivsv gatgverqik nvaagavtat stdaingsql yktaetilkm 1501 pinmagdsgd tvglklgktv nikgsvasga dvtdgniavv gdkatstlsl kmaknltglt 1561 sgtftdatgn qtvingagvt vtptgtgatp isittsgina gnqeikgvkk gttddaavnk 1621 kqmddalagi sstltindgt tdgsvniktg klkvvgesga nalvtttvsg dtisvgtstk 1681 lqnavtaaek sadkdlsnls atgsdkvktl aqdavkvagt glatvsdata agvktytvnv 1741 degklviddt tgkigaagas qgtvqgkdgv attqnvasvv nsaidktkqa lddakhnfag 1801 ddatvisrkh geqlnikgga sttasdltsg niavvgdtts gtlnikmaka ltgltsatyt 1861 dgsgntqtvt ggsttiadaa gnstvvskgg vtttdaag //
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