LOCUS NP_177629 415 aa linear PLN 20-OCT-2022
DEFINITION ADP-glucose pyrophosphorylase family protein [Arabidopsis
thaliana].
ACCESSION NP_177629
VERSION NP_177629.1
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
DBSOURCE REFSEQ: accession NM_106149.4
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (residues 1 to 415)
AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
Fraser,C.M., Venter,J.C. and Davis,R.W.
TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 816-820 (2000)
PUBMED 11130712
REFERENCE 2 (residues 1 to 415)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (residues 1 to 415)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (residues 1 to 415)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 5 (residues 1 to 415)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
The reference sequence is identical to AEE35646.
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..415
/organism="Arabidopsis thaliana"
/db_xref="taxon:3702"
/chromosome="1"
/ecotype="Columbia"
Protein 1..415
/product="ADP-glucose pyrophosphorylase family protein"
/calculated_mol_wt=45433
Region 11..274
/region_name="M1P_guanylylT_A_like_N"
/note="N-terminal domain of M1P_guanylyl_A_ like proteins
are likely to be a isoform of GDP-mannose
pyrophosphorylase; cd06428"
/db_xref="CDD:133050"
Site order(14..17,33,120..122,186)
/site_type="active"
/note="putative substrate binding site [active]"
/db_xref="CDD:133050"
Site order(122,260,262)
/site_type="active"
/note="metal binding site [active]"
/db_xref="CDD:133050"
Region 303..390
/region_name="LbetaH"
/note="Left-handed parallel beta-Helix (LbetaH or LbH)
domain: The alignment contains 5 turns, each containing
three imperfect tandem repeats of a hexapeptide repeat
motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing
hexapeptide repeats are often enzymes...; cl00160"
/db_xref="CDD:469633"
Site order(314,316,320,322,332,337,339,349,353..354,356,366,
381,383,385)
/site_type="other"
/note="putative trimer interface [polypeptide binding]"
/db_xref="CDD:100062"
Site order(349,351..352,356,368,385)
/site_type="other"
/note="putative CoA binding site [chemical binding]"
/db_xref="CDD:100062"
CDS 1..415
/locus_tag="AT1G74910"
/gene_synonym="F25A4.12; F25A4_12"
/coded_by="NM_106149.4:516..1763"
/inference="Similar to RNA sequence,
EST:INSD:EH800795.1,INSD:ES124237.1,INSD:BP628909.1,
INSD:DR287709.1,INSD:EH946901.1,INSD:DR270858.1,
INSD:AV548773.1,INSD:EL991167.1,INSD:EL209650.1,
INSD:BP850534.2,INSD:AA712990.1,INSD:DR270840.1,
INSD:AI994820.1,INSD:DR270842.1,INSD:Z38092.1,
INSD:EL001910.1,INSD:EL128104.1,INSD:EL034786.1,
INSD:BP869068.1,INSD:AV556478.1,INSD:DR270849.1,
INSD:BP861454.1,INSD:EL065436.1,INSD:ES008622.1,
INSD:EL260621.1,INSD:BP666127.1,INSD:DR270841.1,
INSD:DR270837.1,INSD:EL293698.1,INSD:DR270848.1,
INSD:EH835250.1,INSD:EH917619.1,INSD:N38149.1,
INSD:EL150814.1,INSD:AV829247.1,INSD:BP853003.1,
INSD:ES212746.1,INSD:EL032851.1,INSD:EL272502.1,
INSD:DR270859.1,INSD:DR270836.1,INSD:N65247.1,
INSD:EL985492.1,INSD:EH865084.1,INSD:T04179.1,
INSD:BP844941.1,INSD:EL223810.1,INSD:AA585919.1,
INSD:AV827347.1,INSD:DR270845.1,INSD:DR270854.1,
INSD:DR270843.1,INSD:EH822267.1,INSD:EH803206.1,
INSD:ES210102.1,INSD:EL018969.1,INSD:AV441881.1,
INSD:ES153224.1,INSD:EL330015.1,INSD:DR270855.1,
INSD:EH991501.1,INSD:EL317147.1,INSD:DR270857.1,
INSD:DR270851.1,INSD:DR270856.1,INSD:BP844939.1,
INSD:EH795735.1,INSD:DR270846.1,INSD:DR270853.1,
INSD:BP671038.1,INSD:EL982464.1,INSD:BP843926.1,
INSD:BP844940.1,INSD:DR270850.1,INSD:ES005317.1,
INSD:BP855353.1,INSD:EH968865.1,INSD:DR270839.1,
INSD:ES211754.1,INSD:ES194323.1,INSD:EH872574.1,
INSD:ES003929.1,INSD:DR270838.1,INSD:DR270852.1,
INSD:DR270844.1,INSD:EL242526.1,INSD:EH848261.1,
INSD:DR270847.1"
/note="ADP-glucose pyrophosphorylase family protein;
FUNCTIONS IN: transferase activity, nucleotidyltransferase
activity; INVOLVED IN: response to cadmium ion,
biosynthetic process; LOCATED IN: peroxisome; EXPRESSED
IN: 24 plant structures; EXPRESSED DURING: 13 growth
stages; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like
(InterPro:IPR011004), Nucleotidyl transferase
(InterPro:IPR005835); BEST Arabidopsis thaliana protein
match is: ADP-glucose pyrophosphorylase family protein
(TAIR:AT2G04650.1); Has 8966 Blast hits to 8959 proteins
in 2015 species: Archae - 647; Bacteria - 5765; Metazoa -
388; Fungi - 304; Plants - 435; Viruses - 0; Other
Eukaryotes - 1427 (source: NCBI BLink)."
/db_xref="Araport:AT1G74910"
/db_xref="GeneID:843830"
/db_xref="TAIR:AT1G74910"
ORIGIN
1 mgssmeekvv avimvggptk gtrfrplsln ipkplfpiag qpmvhhpisa ckripnlaqi
61 ylvgfyeere falyvsaisn elkvpvrylr edkphgsagg lyhfrnlime dspshiflln
121 cdvccsfplp kmleahrgyg gigtllvikv spesasqfge lvadpvtnel lhytekpetf
181 vsdrincgvy vftpeifnai gdvstqrkdr atlkrvssfe alqpatript dfvrldqdil
241 splagkkrly tyetmdfweq ikspgmslrc sglylsqfrl tspqllasgd gtrsaivigd
301 vyihpsakvh ptakigpnvs isanarvgpg vrlmsciild dveimenavv tnaivgwkss
361 igrwsrvqae gvynsklgvt ilgdsvaved evvvtssivl pnktlnvsvq deiil
//