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C2H2-like zinc finger protein [Arabidopsis thaliana]

NCBI Reference Sequence: NP_568969.1

Identical Proteins FASTA Graphics 

LOCUS       NP_568969                271 aa            linear   PLN 20-OCT-2022
DEFINITION  C2H2-like zinc finger protein [Arabidopsis thaliana].
ACCESSION   NP_568969
VERSION     NP_568969.1
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
DBSOURCE    REFSEQ: accession NM_125723.3
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (residues 1 to 271)
  AUTHORS   Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
            Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
            Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
            Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
            Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
            Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
            Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
            Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
            Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
            Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
            Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
            See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
            Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
            Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
            Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
            Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
            Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
            Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
            Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
            Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
            Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
            Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
            Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
  CONSRTM   Kazusa DNA Research Institute; Cold Spring Harbor and Washington
            University in St Louis Sequencing Consortium; European Union
            Arabidopsis Genome Sequencing Consortium
  TITLE     Sequence and analysis of chromosome 5 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 823-826 (2000)
   PUBMED   11130714
REFERENCE   2  (residues 1 to 271)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 271)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (residues 1 to 271)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            The reference sequence is identical to AED97727.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..271
                     /organism="Arabidopsis thaliana"
                     /db_xref="taxon:3702"
                     /chromosome="5"
                     /ecotype="Columbia"
     Protein         1..271
                     /product="C2H2-like zinc finger protein"
                     /calculated_mol_wt=31151
     CDS             1..271
                     /locus_tag="AT5G63280"
                     /gene_synonym="MDC12.25; MDC12_25"
                     /coded_by="NM_125723.3:55..870"
                     /inference="Similar to RNA sequence,
                     EST:INSD:BP863431.1,INSD:BP583639.1,INSD:DR269997.1,
                     INSD:AV785686.1,INSD:BP569480.1,INSD:EL077248.1,
                     INSD:DR269995.1,INSD:BP633902.1,INSD:DR269996.1,
                     INSD:AV824335.1,INSD:EH905615.1,INSD:ES079668.1,
                     INSD:AI995999.1,INSD:DR269994.1,INSD:BP570266.1,
                     INSD:AV555496.1,INSD:DR269998.1,INSD:ES000482.1,
                     INSD:EH880161.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:AY084683.1,INSD:AY133853.1,INSD:AY063959.1"
                     /note="C2H2-like zinc finger protein; FUNCTIONS IN: zinc
                     ion binding, nucleic acid binding; INVOLVED IN:
                     biological_process unknown; LOCATED IN: endomembrane
                     system, intracellular; EXPRESSED IN: 22 plant structures;
                     EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
                     DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880),
                     Zinc finger, C2H2-type (InterPro:IPR007087); BEST
                     Arabidopsis thaliana protein match is: zinc finger (C2H2
                     type) family protein (TAIR:AT5G40710.1); Has 30201 Blast
                     hits to 17322 proteins in 780 species: Archae - 12;
                     Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
                     5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
                     BLink)."
                     /db_xref="GeneID:836448"
                     /db_xref="TAIR:AT5G63280"
                     /db_xref="Araport:AT5G63280"
ORIGIN      
        1 mgrlweslpv illllvlllh qsvsqgfees estrlvneev evsnapeihc srersraawq
       61 iiqdyltpfv ereryeipkn crlhpdndly rdqehhkvhv dvfewkcgyc kksfndekfl
      121 dkhfstrhyn llnttdtkcl adlcgalhcd fvlsskkpks kcnppavakn rhlcesvans
      181 cfpvsqgpsa srlhehflrq fcdahtctgn dkpfprggkk ksgvfylais iltlmllplf
      241 yllvflhqre krsgtqdlrr iiksgkktkp s
//
Feature
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Protein clusters for NP_568969.1

Reference sequence information

  • RefSeq mRNA
    See reference mRNA sequence for the AT5G63280 gene (NM_125723.3).

More about the AT5G63280 gene

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