LOCUS NP_568969 271 aa linear PLN 20-OCT-2022
DEFINITION C2H2-like zinc finger protein [Arabidopsis thaliana].
ACCESSION NP_568969
VERSION NP_568969.1
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
DBSOURCE REFSEQ: accession NM_125723.3
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (residues 1 to 271)
AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
CONSRTM Kazusa DNA Research Institute; Cold Spring Harbor and Washington
University in St Louis Sequencing Consortium; European Union
Arabidopsis Genome Sequencing Consortium
TITLE Sequence and analysis of chromosome 5 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 823-826 (2000)
PUBMED 11130714
REFERENCE 2 (residues 1 to 271)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (residues 1 to 271)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (residues 1 to 271)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
The reference sequence is identical to AED97727.
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..271
/organism="Arabidopsis thaliana"
/db_xref="taxon:3702"
/chromosome="5"
/ecotype="Columbia"
Protein 1..271
/product="C2H2-like zinc finger protein"
/calculated_mol_wt=31151
CDS 1..271
/locus_tag="AT5G63280"
/gene_synonym="MDC12.25; MDC12_25"
/coded_by="NM_125723.3:55..870"
/inference="Similar to RNA sequence,
EST:INSD:BP863431.1,INSD:BP583639.1,INSD:DR269997.1,
INSD:AV785686.1,INSD:BP569480.1,INSD:EL077248.1,
INSD:DR269995.1,INSD:BP633902.1,INSD:DR269996.1,
INSD:AV824335.1,INSD:EH905615.1,INSD:ES079668.1,
INSD:AI995999.1,INSD:DR269994.1,INSD:BP570266.1,
INSD:AV555496.1,INSD:DR269998.1,INSD:ES000482.1,
INSD:EH880161.1"
/inference="similar to RNA sequence,
mRNA:INSD:AY084683.1,INSD:AY133853.1,INSD:AY063959.1"
/note="C2H2-like zinc finger protein; FUNCTIONS IN: zinc
ion binding, nucleic acid binding; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system, intracellular; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880),
Zinc finger, C2H2-type (InterPro:IPR007087); BEST
Arabidopsis thaliana protein match is: zinc finger (C2H2
type) family protein (TAIR:AT5G40710.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink)."
/db_xref="GeneID:836448"
/db_xref="TAIR:AT5G63280"
/db_xref="Araport:AT5G63280"
ORIGIN
1 mgrlweslpv illllvlllh qsvsqgfees estrlvneev evsnapeihc srersraawq
61 iiqdyltpfv ereryeipkn crlhpdndly rdqehhkvhv dvfewkcgyc kksfndekfl
121 dkhfstrhyn llnttdtkcl adlcgalhcd fvlsskkpks kcnppavakn rhlcesvans
181 cfpvsqgpsa srlhehflrq fcdahtctgn dkpfprggkk ksgvfylais iltlmllplf
241 yllvflhqre krsgtqdlrr iiksgkktkp s
//