LOCUS NP_850989 619 aa linear PLN 20-OCT-2022
DEFINITION RNAse E/G-like protein [Arabidopsis thaliana].
ACCESSION NP_850989
VERSION NP_850989.1
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
DBSOURCE REFSEQ: accession NM_180658.2
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (residues 1 to 619)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (residues 1 to 619)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (residues 1 to 619)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (residues 1 to 619)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
The reference sequence is identical to AEC05815.
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..619
/organism="Arabidopsis thaliana"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
Protein 1..619
/product="RNAse E/G-like protein"
/calculated_mol_wt=68289
Region 48..593
/region_name="CafA"
/note="Ribonuclease G or E [Translation, ribosomal
structure and biogenesis]; COG1530"
/db_xref="CDD:441139"
CDS 1..619
/gene="RNEE/G"
/locus_tag="AT2G04270"
/gene_synonym="RNase E; RNAse E/G-like; RNE; T23O15.10;
T23O15_10"
/coded_by="NM_180658.2:320..2179"
/inference="Similar to RNA sequence, EST:INSD:AV829270.1"
/inference="similar to RNA sequence, mRNA:INSD:AJ252122.1"
/note="RNAse E/G-like (RNEE/G); FUNCTIONS IN:
endoribonuclease activity; INVOLVED IN: chloroplast
organization; LOCATED IN: chloroplast; EXPRESSED IN: 21
plant structures; EXPRESSED DURING: 14 growth stages;
CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold
(InterPro:IPR012340), Nucleic acid-binding, OB-fold-like
(InterPro:IPR016027), RNA-binding protein
AU-1/Ribonuclease E/G (InterPro:IPR019307), Ribonuclease
E/G (InterPro:IPR004659); Has 9804 Blast hits to 8305
proteins in 1820 species: Archae - 3; Bacteria - 6220;
Metazoa - 3; Fungi - 1; Plants - 53; Viruses - 0; Other
Eukaryotes - 3524 (source: NCBI BLink)."
/db_xref="Araport:AT2G04270"
/db_xref="GeneID:814965"
/db_xref="TAIR:AT2G04270"
ORIGIN
1 mqtdseqdve scddnennln tdeqnhqlte tllpdggffq sesiattili nssictvqri
61 avleggklve lllepvktnv qcdsvylgvi tkfvphmgga fvnigsarhs fmdiksnrep
121 fifppfcdgs kkqaadgspi lsmndipaph eiehasydfe asslldidsn dpgesfhddd
181 dehendeyhv sdhlaglvng tvvnhgavev gsenghipme rghsadslds nasvakaskv
241 msskdnkwiq vrkgtkiivq vvkeglgtkg ptltaypklr srfwvlltrc krigvskkis
301 gvertrlkvi aktlqpqgfg ltvrtvaagh sleelqkdld gllltwknit deaksaalaa
361 degvegaipa llhramgqtl svvqdyfndk vekmvvdspr tyhevthylq dmapdlcnrv
421 elhdkgiplf dlyeieeeie gilskrvpls nggslvieqt ealvsidvng ghgmfgqgns
481 qekailevnl aaarqiarei rlrdiggiiv vdfidmades nkrlvyeevk kaverdrslv
541 kvselsrhgl meitrkrvrp svtfmisepc scchatgrve alettfskie qeicrqlvsv
601 iisilfcyfs fqpneehle
//