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RNAse E/G-like protein [Arabidopsis thaliana]

NCBI Reference Sequence: NP_850989.1

Identical Proteins FASTA Graphics 

LOCUS       NP_850989                619 aa            linear   PLN 20-OCT-2022
DEFINITION  RNAse E/G-like protein [Arabidopsis thaliana].
ACCESSION   NP_850989
VERSION     NP_850989.1
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
DBSOURCE    REFSEQ: accession NM_180658.2
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (residues 1 to 619)
  AUTHORS   Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
            Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
            Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
            Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
            Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
            Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
            Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
            Venter,J.C.
  TITLE     Sequence and analysis of chromosome 2 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 402 (6763), 761-768 (1999)
   PUBMED   10617197
REFERENCE   2  (residues 1 to 619)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 619)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (residues 1 to 619)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            The reference sequence is identical to AEC05815.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..619
                     /organism="Arabidopsis thaliana"
                     /db_xref="taxon:3702"
                     /chromosome="2"
                     /ecotype="Columbia"
     Protein         1..619
                     /product="RNAse E/G-like protein"
                     /calculated_mol_wt=68289
     Region          48..593
                     /region_name="CafA"
                     /note="Ribonuclease G or E [Translation, ribosomal
                     structure and biogenesis]; COG1530"
                     /db_xref="CDD:441139"
     CDS             1..619
                     /gene="RNEE/G"
                     /locus_tag="AT2G04270"
                     /gene_synonym="RNase E; RNAse E/G-like; RNE; T23O15.10;
                     T23O15_10"
                     /coded_by="NM_180658.2:320..2179"
                     /inference="Similar to RNA sequence, EST:INSD:AV829270.1"
                     /inference="similar to RNA sequence, mRNA:INSD:AJ252122.1"
                     /note="RNAse E/G-like (RNEE/G); FUNCTIONS IN:
                     endoribonuclease activity; INVOLVED IN: chloroplast
                     organization; LOCATED IN: chloroplast; EXPRESSED IN: 21
                     plant structures; EXPRESSED DURING: 14 growth stages;
                     CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold
                     (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like
                     (InterPro:IPR016027), RNA-binding protein
                     AU-1/Ribonuclease E/G (InterPro:IPR019307), Ribonuclease
                     E/G (InterPro:IPR004659); Has 9804 Blast hits to 8305
                     proteins in 1820 species: Archae - 3; Bacteria - 6220;
                     Metazoa - 3; Fungi - 1; Plants - 53; Viruses - 0; Other
                     Eukaryotes - 3524 (source: NCBI BLink)."
                     /db_xref="Araport:AT2G04270"
                     /db_xref="GeneID:814965"
                     /db_xref="TAIR:AT2G04270"
ORIGIN      
        1 mqtdseqdve scddnennln tdeqnhqlte tllpdggffq sesiattili nssictvqri
       61 avleggklve lllepvktnv qcdsvylgvi tkfvphmgga fvnigsarhs fmdiksnrep
      121 fifppfcdgs kkqaadgspi lsmndipaph eiehasydfe asslldidsn dpgesfhddd
      181 dehendeyhv sdhlaglvng tvvnhgavev gsenghipme rghsadslds nasvakaskv
      241 msskdnkwiq vrkgtkiivq vvkeglgtkg ptltaypklr srfwvlltrc krigvskkis
      301 gvertrlkvi aktlqpqgfg ltvrtvaagh sleelqkdld gllltwknit deaksaalaa
      361 degvegaipa llhramgqtl svvqdyfndk vekmvvdspr tyhevthylq dmapdlcnrv
      421 elhdkgiplf dlyeieeeie gilskrvpls nggslvieqt ealvsidvng ghgmfgqgns
      481 qekailevnl aaarqiarei rlrdiggiiv vdfidmades nkrlvyeevk kaverdrslv
      541 kvselsrhgl meitrkrvrp svtfmisepc scchatgrve alettfskie qeicrqlvsv
      601 iisilfcyfs fqpneehle
//
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