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oxidoreductase [Klebsiella sp. HMSC09D12]

GenBank: OFV46270.1

Identical Proteins FASTA Graphics 

LOCUS       OFV46270                 165 aa            linear   BCT 17-OCT-2016
DEFINITION  oxidoreductase [Klebsiella sp. HMSC09D12].
ACCESSION   OFV46270
VERSION     OFV46270.1
DBLINK      BioProject: PRJNA269915
            BioSample: SAMN03609714
DBSOURCE    accession LUAR01000189.1
KEYWORDS    HIGH_QUALITY_DRAFT.
SOURCE      Klebsiella sp. HMSC09D12
  ORGANISM  Klebsiella sp. HMSC09D12
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Klebsiella/Raoultella group;
            Klebsiella.
REFERENCE   1  (residues 1 to 165)
  AUTHORS   Mitreva,M., Pepin,K.H., Mihindukulasuriya,K.A., Fulton,R.,
            Fronick,C., O'Laughlin,M., Miner,T., Herter,B., Rosa,B.A.,
            Cordes,M., Tomlinson,C., Wollam,A., Palsikar,V.B., Mardis,E.R. and
            Wilson,R.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-FEB-2016) McDonnell Genome Institute, Washington
            University School of Medicine, 4444 Forest Park, St. Louis, MO
            63108, USA
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            The WUSC is a large strain collection isolated from clinical
            samples. Each sample is associated with metadata, including source,
            isolation site, 16s rRNA, metabolic, and other phenotypic
            information. The goal is to sample an adequate number of important,
            yet minor species, further adding to the catelogue of sequenced
            bacterial genomes and improving the diversity of the genomes
            available to the public. WGS will be preformed on approximely 550
            isolates. Samples were selected based on RDP analysis at the genus
            level. This project is co-owned with the Human Microbiome Project
            DACC.
            
            Coding sequences were predicted using GeneMark v3.3 and Glimmer3
            v3.02. Intergenic regions not spanned by GeneMark and Glimmer3 were
            blasted against NCBI's non-redundant (NR)  database and predictions
            generated based on protein alignments. tRNA genes were determined
            using tRNAscan-SE 1.23 and non-coding RNA genes by RNAmmer-1.2 and
            Rfam v8.1. The final gene set is processed through several programs
            such as Kegg (Release 56), psortB (Version 3.0.3) and Interproscan
            (Version 4.7) to determine possible function. Gene product names
            are determined by BER (Version 2.5). Gene names are generated at
            the contig level and may not necessarily reflect any known order or
            orientation between contigs.
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: High-Quality Draft
            Current Finishing Status :: High-Quality Draft
            Assembly Method          :: Velvet v. 1.1.04
            Genome Coverage          :: 102x
            Sequencing Technology    :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/04/2016 11:57:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 3.1
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 5,855
            CDS (total)                       :: 5,783
            Genes (coding)                    :: 5,629
            CDS (coding)                      :: 5,629
            Genes (RNA)                       :: 72
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 58
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 154
            Pseudo Genes (ambiguous residues) :: 0 of 154
            Pseudo Genes (frameshifted)       :: 31 of 154
            Pseudo Genes (incomplete)         :: 116 of 154
            Pseudo Genes (internal stop)      :: 20 of 154
            Pseudo Genes (multiple problems)  :: 10 of 154
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..165
                     /organism="Klebsiella sp. HMSC09D12"
                     /strain="HMSC09D12"
                     /isolation_source="Urinary Tract"
                     /host="Homo sapiens"
                     /db_xref="HMP:3178"
                     /db_xref="taxon:1581146"
     Protein         1..165
                     /product="oxidoreductase"
     Region          1..165
                     /region_name="COG3915"
                     /note="Uncharacterized conserved protein [Function
                     unknown]"
                     /db_xref="CDD:443120"
     CDS             1..165
                     /locus_tag="HMPREF3178_24810"
                     /coded_by="complement(LUAR01000189.1:9632..10129)"
                     /inference="EXISTENCE: similar to AA
                     sequence:RefSeq:WP_004852358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
ORIGIN      
        1 mrlifaalfc vmvlpsafae klpapvgkpv ltisglitnt negdtavfdv aaleklgmet
       61 ivtttpwysg kvrfdgvsls klmdlvgakg ksarvlalnd yttivpiddf hkfpvilalk
      121 mngeymrird kgplfivypy dsspelqnqi yysrsawqvs kiiie
//
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